View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19764_low_25 (Length: 244)

Name: NF19764_low_25
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19764_low_25
NF19764_low_25
[»] chr3 (4 HSPs)
chr3 (1-230)||(32369057-32369286)
chr3 (9-224)||(8169399-8169614)
chr3 (57-217)||(54168571-54168731)
chr3 (57-142)||(53355430-53355515)
[»] chr1 (2 HSPs)
chr1 (1-230)||(4959023-4959252)
chr1 (57-217)||(26314783-26314943)
[»] chr4 (4 HSPs)
chr4 (19-211)||(26075706-26075898)
chr4 (57-217)||(50629158-50629318)
chr4 (57-217)||(44150328-44150488)
chr4 (63-202)||(31357946-31358085)
[»] chr7 (3 HSPs)
chr7 (1-157)||(5242574-5242730)
chr7 (57-217)||(7941310-7941470)
chr7 (57-217)||(27760167-27760327)
[»] chr2 (3 HSPs)
chr2 (19-219)||(12368055-12368253)
chr2 (57-217)||(8054162-8054322)
chr2 (57-217)||(36673821-36673981)
[»] chr8 (8 HSPs)
chr8 (111-228)||(18194255-18194372)
chr8 (57-217)||(198911-199071)
chr8 (57-217)||(313748-313908)
chr8 (57-217)||(30407030-30407190)
chr8 (57-217)||(43808710-43808870)
chr8 (57-217)||(41948578-41948738)
chr8 (57-124)||(17783375-17783442)
chr8 (57-115)||(1290196-1290254)
[»] scaffold0044 (1 HSPs)
scaffold0044 (57-217)||(46092-46252)
[»] chr6 (5 HSPs)
chr6 (57-217)||(8316731-8316891)
chr6 (57-202)||(17162881-17163026)
chr6 (57-217)||(17887856-17888016)
chr6 (57-217)||(27569410-27569570)
chr6 (54-138)||(28247939-28248023)
[»] chr5 (5 HSPs)
chr5 (57-217)||(7100601-7100761)
chr5 (57-217)||(16797439-16797599)
chr5 (57-217)||(12022059-12022219)
chr5 (57-217)||(40368475-40368635)
chr5 (57-202)||(37680821-37680966)
[»] scaffold0440 (1 HSPs)
scaffold0440 (57-217)||(6276-6436)
[»] scaffold0038 (1 HSPs)
scaffold0038 (54-138)||(48101-48185)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 32369057 - 32369286
Alignment:
Q  1 catatattccatacccagctttgcatttcttgaaaccaatttgaagtaggaactgatcaatcctcttgttccatgctctaggtgcttgtttcaagccata 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32369057 catatattccatactcagctttgcatttcttgaaaccaatttgaagtaggaactgatcaatcctcttgttccatgctctaggtgtttgtttcaagccata 32369156  T
Q  101 aagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccaggtggttgtgtaacatacagatcttcttctaatggtccattcaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  32369157 aagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaattcaggtggttgtgtaacatacatatcttcttctaatggtccattcaga 32369256  T
Q  201 aatgcagacttaacatctagatgagataat 230  Q
    ||||||||||||||||||| ||||||||||    
T  32369257 aatgcagacttaacatctatatgagataat 32369286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 8169399 - 8169614
Alignment:
Q  9 ccatacccagctttgcatttcttgaaaccaatttgaagtaggaactgatcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctt 108  Q
    |||||| ||||||||||| | ||||| |||| |||||  | |||||  ||||| |||||||||||||||||||  || |  || ||||||||||||| ||    
T  8169399 ccatactcagctttgcatcttttgaatccaagttgaatcatgaactagtcaattctcttgttccatgctctagaagcctacttaaagccataaagtgatt 8169498  T
Q  109 tgtgtaacttgtacaccacatgctccttcccttttacttcaaatccaggtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcaga 208  Q
    | ||||| |||||||||| ||||||| | ||| | | ||||||||   | ||||  |||||||| | |  |||||| ||| ||||||| || ||||||||    
T  8169499 tatgtaatttgtacaccatatgctcccttcctctgatttcaaatcttagaggttcagtaacatatatagtttcttccaatagtccatttaggaatgcaga 8169598  T
Q  209 cttaacatctagatga 224  Q
    ||| ||||||| ||||    
T  8169599 ctttacatctaaatga 8169614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 54168571 - 54168731
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  54168571 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 54168670  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  54168671 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 54168731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 53355430 - 53355515
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttt 142  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||  | ||||||| || ||||||||||||    
T  53355430 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagtgctttgtgtaatctatacaccatattctccttcccttt 53355515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4959023 - 4959252
Alignment:
Q  1 catatattccatacccagctttgcatttcttgaaaccaatttgaagtaggaactgatcaatcctcttgttccatgctctaggtgcttgtttcaagccata 100  Q
    ||||||| |||||  | ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  4959023 catatataccatattctgctttgcattttttgaatccaatttgaagtaggaactgatcaatcctcttattccatgctctaggtacttgtttcaagccata 4959122  T
Q  101 aagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccaggtggttgtgtaacatacagatcttcttctaatggtccattcaga 200  Q
     || |||||||||||||||||||||| ||||||||| ||  ||||||||||| | |||||||||| || ||||| ||||||||| | |||||||||||||    
T  4959123 gagggctttgtgtaacttgtacaccatatgctcctttccacttacttcaaatactggtggttgtgcaatatacacatcttcttcaagtggtccattcaga 4959222  T
Q  201 aatgcagacttaacatctagatgagataat 230  Q
    ||||||||||| ||||||| ||| ||||||    
T  4959223 aatgcagactttacatctaaatgtgataat 4959252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 26314943 - 26314783
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  26314943 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 26314844  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  26314843 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 26314783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 26075898 - 26075706
Alignment:
Q  19 ctttgcatttcttgaaaccaatttgaagtaggaactgatcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaactt 118  Q
    ||||||||||  |||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| || ||||||||||||||    
T  26075898 ctttgcattttctgaatccaatttgaagtaggaactgattaatcctcttattccatgctctaggtgcttatttcaagccatagagggctttgtgtaactt 26075799  T
Q  119 gtacaccacatgctccttcccttttacttcaaatccaggtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagactt 211  Q
    |||||||| ||||||||||||  |||||||||||||  |||||||||||| ||||| ||| ||||| | ||||||||||||||||||||||||    
T  26075798 gtacaccatatgctccttcccacttacttcaaatcctagtggttgtgtaatatacacatcctcttcaagtggtccattcagaaatgcagactt 26075706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 50629158 - 50629318
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| ||  ||||||||||  | ||||||| || ||| |||||||| | ||| || || |    
T  50629158 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagaggactttgtgtaatctatacaccatatcctctttccctttgatttcgaaacctg 50629257  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||||||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  50629258 gtggttgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 50629318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 44150488 - 44150328
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  44150488 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 44150389  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||  ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  44150388 gtgactgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 44150328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 31358085 - 31357946
Alignment:
Q  63 ctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccaggtggtt 162  Q
    ||||||||||||||||| ||||| |||||||| ||||| || |||||||||||  | ||||||| || ||| |||||||| | ||  || || ||||| |    
T  31358085 ctcttgttccatgctcttggtgcctgtttcaatccatagagagctttgtgtaatctatacaccatatcctctttccctttgattttgaaacctggtggat 31357986  T
Q  163 gtgtaacatacagatcttcttctaatggtccattcagaaa 202  Q
    |||| |||||||  ||||| ||||| || ||||| |||||    
T  31357985 gtgtcacatacacttcttcatctaaaggaccatttagaaa 31357946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 5242730 - 5242574
Alignment:
Q  1 catatattccatacccagctttgcatttcttgaaaccaatttgaagtaggaactgatcaatcctcttgttccatgctctaggtgcttgtttcaagccata 100  Q
    |||||||||||||| |||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5242730 catatattccatactcagctttgcatttcttaaaaccaatttaaagtgggaactgatcaatcctcttgttccatgctctagatgcttgtttcaagccata 5242631  T
Q  101 aagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccagg 157  Q
     || ||||||||||||||||||||||  || ||||| ||||||||||||||||||||    
T  5242630 gagagctttgtgtaacttgtacaccatttgatcctttccttttacttcaaatccagg 5242574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 7941310 - 7941470
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  7941310 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 7941409  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  7941410 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 7941470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 27760327 - 27760167
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  27760327 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 27760228  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  27760227 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 27760167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 12368253 - 12368055
Alignment:
Q  19 ctttgcatttcttgaaaccaatttgaagtaggaactgatcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaactt 118  Q
    ||||||||||  |||| ||| |||||| |||||| |||||||||||||| |||||| || |||||| ||||||||||||||| || ||||| ||||||||    
T  12368253 ctttgcattttctgaatccattttgaattaggaagtgatcaatcctcttattccattctataggtgtttgtttcaagccatagagggctttttgtaactt 12368154  T
Q  119 gtacaccacatgctccttcccttttacttcaaatccaggtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatct 218  Q
    |||||||| ||||||||||||  ||||||||||||| ||||||||||||  ||||| ||| ||||| | |||||||||||||||||||||||| ||||||    
T  12368153 gtacaccatatgctccttcccacttacttcaaatcctggtggttgtgta--atacacatcctcttcaagtggtccattcagaaatgcagactttacatct 12368056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 8054322 - 8054162
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  8054322 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 8054223  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  8054222 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 8054162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 36673981 - 36673821
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  36673981 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 36673882  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  36673881 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 36673821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 18194372 - 18194255
Alignment:
Q  111 tgtaacttgtacaccacatgctccttcccttttacttcaaatccaggtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagact 210  Q
    |||||||||||||||| ||||||||||||  ||||||||||||| ||||||||||||| |||||  |  ||||| | |||||||||||||||||||||||    
T  18194372 tgtaacttgtacaccatatgctccttcccacttacttcaaatcctggtggttgtgtaatatacactttctcttcaagtggtccattcagaaatgcagact 18194273  T
Q  211 taacatctagatgagata 228  Q
    | ||||||| ||| ||||    
T  18194272 ttacatctaaatgtgata 18194255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 198911 - 199071
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  198911 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 199010  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  199011 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 199071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 313748 - 313908
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  313748 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 313847  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  313848 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 313908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 30407030 - 30407190
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  30407030 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 30407129  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  30407130 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 30407190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 43808710 - 43808870
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  43808710 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 43808809  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  43808810 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 43808870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 41948738 - 41948578
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| |||||||||||||| ||||| || |||||||||||  | ||||||| || ||  |||||||| | ||  || || |    
T  41948738 tcaattctcttgttccaagctcttggtgcttgtttcaatccatagagagctttgtgtaatctatacaccatattctatttccctttgattttgaaacctg 41948639  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  41948638 gtggatgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 41948578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 17783375 - 17783442
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacac 124  Q
    ||||||||||| ||||||||||| || || |||||||||||||| || |  |||||||| ||||||||    
T  17783375 tcaatcctcttattccatgctcttggagcatgtttcaagccatagagaggcttgtgtaatttgtacac 17783442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 1290254 - 1290196
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaa 115  Q
    ||||| ||||| ||||| ||||| |||||||||||||| ||||| || |||||||||||    
T  1290254 tcaattctcttattccaagctcttggtgcttgtttcaatccatagagagctttgtgtaa 1290196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 46092 - 46252
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  46092 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 46191  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  46192 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 46252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 8316731 - 8316891
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  8316731 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 8316830  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  8316831 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 8316891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 202
Target Start/End: Complemental strand, 17163026 - 17162881
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| |||||||| ||||| ||||| ||||| |||||| |  | ||||||| |  |||||||||||| ||||  || || |    
T  17163026 tcaattctcttgttccaggctcttggtgcttgcttcaaaccatatagtgccttgtgtgatctatacaccatactctccttccctttgactttgaaacctg 17162927  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaa 202  Q
    |||||||||| |||||||  ||||| ||||| || ||||| |||||    
T  17162926 gtggttgtgtcacatacacttcttcatctaaaggaccatttagaaa 17162881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 17887856 - 17888016
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| |||||||| || ||||| ||||| |||||||| ||||| || |||||||||||  | ||||||| || ||| |||||||| | || ||| || |    
T  17887856 tcaattctcttgtttcaagctcttggtgcctgtttcaatccatagagggctttgtgtaatctatacaccatatcctctttccctttgattttaaaacctg 17887955  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||||||||| |||||||  ||||| ||| | || ||||| ||||| ||||| || |||||    
T  17887956 gtggttgtgtcacatacacttcttcatctgaaggaccatttagaaaagcagattttacatc 17888016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 27569410 - 27569570
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| |||||  |||| |||||||| ||||| || |||||||||||  | ||||||| ||  || |||||||| | ||  || || |    
T  27569410 tcaattctcttgttccaagctcttcgtgcctgtttcaatccatagagagctttgtgtaatctatacaccatatcttctttccctttgattttgaaacctg 27569509  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||||||||| |||||||  ||||| ||||| || ||||||||||| ||||| || |||||    
T  27569510 gtggttgtgtcacatacacttcttcatctaaaggaccattcagaaaagcagattttacatc 27569570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 28248023 - 28247939
Alignment:
Q  54 tgatcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcc 138  Q
    ||||||||  ||||||||||||||||||| || ||||| || ||||| |||||||| || |  || ||||||||||  |||||||    
T  28248023 tgatcaattttcttgttccatgctctaggagcctgttttaatccatatagtgctttatgcagtttatacaccacattttccttcc 28247939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 7100601 - 7100761
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  7100601 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 7100700  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  7100701 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 7100761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 16797599 - 16797439
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  ||||||||| || ||| |||||||| | ||  || || |    
T  16797599 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctgtacaccatatcctctttccctttgattttgaaacctg 16797500  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  16797499 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 16797439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 12022219 - 12022059
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  | ||||||| || ||| |||||||| | ||  || || |    
T  12022219 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctatacaccatatcctctttccctttgattttgaaacctg 12022120  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  12022119 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 12022059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 40368475 - 40368635
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||  | ||||||| || ||| |||||||| | ||  || || |    
T  40368475 tcaattctcttgttccaagctcttggtgcctgtttcaatccatagagagctttgtgtaatctatacaccatatcctctttccctttgattttgaaacctg 40368574  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    | || ||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  40368575 gcggctgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 40368635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 202
Target Start/End: Complemental strand, 37680966 - 37680821
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| | ||| ||||| |||||||| ||||| || |||||||||||  | ||||||| || ||| |||||||| | ||  || || |    
T  37680966 tcaattctcttgttccaagttcttggtgcctgtttcaatccatagagagctttgtgtaatctatacaccatatcctctttccctttgattttgaaacctg 37680867  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaa 202  Q
    |||| ||||| |||||||  ||||| ||||| || ||||| |||||    
T  37680866 gtggctgtgtcacatacacttcttcatctaaaggaccatttagaaa 37680821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 6436 - 6276
Alignment:
Q  57 tcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttcaaatccag 156  Q
    ||||| ||||||||||| | ||| ||||| |||||||| ||||| || |||||||||||  | ||||||| || ||| |||||||| | ||  || || |    
T  6436 tcaattctcttgttccaagttcttggtgcctgtttcaatccatagagagctttgtgtaatctatacaccatatcctctttccctttgattttgaaacctg 6337  T
Q  157 gtggttgtgtaacatacagatcttcttctaatggtccattcagaaatgcagacttaacatc 217  Q
    |||||||||| |||||||  ||||| ||||| || ||||| ||||| ||||| || |||||    
T  6336 gtggttgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatc 6276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 48185 - 48101
Alignment:
Q  54 tgatcaatcctcttgttccatgctctaggtgcttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcc 138  Q
    ||||||||  ||||||||||||||||||| || ||||| || ||||| |||||||| || |  || ||||||||||  |||||||    
T  48185 tgatcaattttcttgttccatgctctaggagcctgttttaatccatatagtgctttatgcagtttatacaccacattttccttcc 48101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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