View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19764_low_26 (Length: 239)
Name: NF19764_low_26
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19764_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 107 - 207
Target Start/End: Original strand, 17779984 - 17780083
Alignment:
| Q |
107 |
cattgtttaacaaggctcgtactcaagacattgcttaaagaatcttagttcaattttaatgttggttaaaagtcattatttctaccagcattttttctta |
206 |
Q |
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| T |
17779984 |
cattgttcaacaaggctcgtactgaagactttgcttaaagaatcttagttcaattttaatgttgg-taaaagtcattatttctaccagcattttttctta |
17780082 |
T |
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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 17779849 - 17779933
Alignment:
| Q |
27 |
gttgtaacttgaggaaatatgtgaactcaaatgttatggaatagaaatttgactgcaatgggagattttcaaaatagcaccattg |
111 |
Q |
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| T |
17779849 |
gttgtaacttgagcaaatatgtgaactcaaatgttatggaatagaaatttgactgcaatgggagattttcaaaatggtaccattg |
17779933 |
T |
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