View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19764_low_27 (Length: 228)
Name: NF19764_low_27
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19764_low_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 17779549 - 17779776
Alignment:
| Q |
1 |
tgatgaatttcaatattggtgatgcatggaagtcaaatttgctttgggatacttcattttgtcctattgatgttccctctagttattcaataaccaagtg |
100 |
Q |
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| T |
17779549 |
tgatgaatttcaatattggtgatgcatggaagtcaaatttgctttgggatacttcattttgtcctattgatgttccctctagttattcaacaaccaagtg |
17779648 |
T |
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| Q |
101 |
ttacacttaatttgtaccttttatttttacataagtagaatctagaagcacttattttttctagctagcttctatagtaggaagtgagtactagtgattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17779649 |
ttacacttaatttgtaccttttatttttacataagtagaatctagaagcacttattttttctagctagcttctatagtaggaagtgagtactggtgattc |
17779748 |
T |
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| Q |
201 |
tgaccnnnnnnnaactttgatttgtgtt |
228 |
Q |
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||||| |||||||||||||||| |
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| T |
17779749 |
tgacctttttttaactttgatttgtgtt |
17779776 |
T |
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