View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19764_low_28 (Length: 228)

Name: NF19764_low_28
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19764_low_28
NF19764_low_28
[»] chr5 (3 HSPs)
chr5 (25-120)||(2334655-2334750)
chr5 (29-89)||(35847205-35847265)
chr5 (25-89)||(17218822-17218886)
[»] chr1 (1 HSPs)
chr1 (27-120)||(4397382-4397476)
[»] chr8 (2 HSPs)
chr8 (25-89)||(38388025-38388089)
chr8 (55-94)||(1579241-1579281)
[»] chr2 (3 HSPs)
chr2 (27-117)||(37128835-37128926)
chr2 (25-95)||(41958333-41958403)
chr2 (55-117)||(4397370-4397433)
[»] chr3 (2 HSPs)
chr3 (25-95)||(16285167-16285237)
chr3 (25-115)||(17324067-17324158)
[»] chr4 (1 HSPs)
chr4 (42-120)||(26500202-26500281)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 2334655 - 2334750
Alignment:
Q  25 agtgatcaattagacatccgatagtgataatgcttcaaatgcacagcttcgaccaccactcaagtttcggtaactcgaggagacatcacaacagcc 120  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2334655 agtgatcaattagacatccgatagtgataatgcttccaacgcacagcttcgaccaccactcaagtttcggtaactcgaggagacatcacaacagcc 2334750  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 35847265 - 35847205
Alignment:
Q  29 atcaattagacatccgatagtgataatgcttcaaatgcacagcttcgaccaccactcaagt 89  Q
    ||||||||| || |||||||||||  ||||||||| |  ||||||||||||||||||||||    
T  35847265 atcaattaggcacccgatagtgattttgcttcaaacgttcagcttcgaccaccactcaagt 35847205  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 17218886 - 17218822
Alignment:
Q  25 agtgatcaattagacatccgatagtgataatgcttcaaatgcacagcttcgaccaccactcaagt 89  Q
    ||||| ||||||| || || ||||||||  ||||||||| |  ||||||||||||||||||||||    
T  17218886 agtgaacaattaggcacccaatagtgattttgcttcaaaagttcagcttcgaccaccactcaagt 17218822  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 4397382 - 4397476
Alignment:
Q  27 tgatcaattagacatccgatagtgataatgcttcaaatgcacagcttcgaccaccactcaagtttcggtaactc-gaggagacatcacaacagcc 120  Q
    ||||||||||| || |||||||||||  ||||||||| |  ||||||||||||||||||||| | ||||   || ||||||||||||||||||||    
T  4397382 tgatcaattaggcacccgatagtgattttgcttcaaacgttcagcttcgaccaccactcaagatccggtctatcggaggagacatcacaacagcc 4397476  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 38388089 - 38388025
Alignment:
Q  25 agtgatcaattagacatccgatagtgataatgcttcaaatgcacagcttcgaccaccactcaagt 89  Q
    ||||||||||||| || |||||||||||  ||||||||| |  ||||||||||||||||||||||    
T  38388089 agtgatcaattaggcacccgatagtgattttgcttcaaacgttcagcttcgaccaccactcaagt 38388025  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 1579281 - 1579241
Alignment:
Q  55 tgcttcaa-atgcacagcttcgaccaccactcaagtttcgg 94  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  1579281 tgcttcaagatgctcagcttcgaccaccactcaagtttcgg 1579241  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 37128835 - 37128926
Alignment:
Q  27 tgatcaattagacatccgatagtgataatgcttcaaatgcacagcttcgaccaccactcaagtttcggtaactc-gaggagacatcacaaca 117  Q
    |||| |||||| || |||||||||||  ||| |||||||  ||||||||||||||| ||||||||||||   || |||||||||||||||||    
T  37128835 tgatgaattaggcacccgatagtgattttgcatcaaatgttcagcttcgaccaccattcaagtttcggtctatcggaggagacatcacaaca 37128926  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 41958403 - 41958333
Alignment:
Q  25 agtgatcaattagacatccgatagtgataatgcttcaaatgcacagcttcgaccaccactcaagtttcggt 95  Q
    |||||| |||||| |  |||||||||||  || ||||||||  ||||||||||||||||||||||||||||    
T  41958403 agtgatgaattaggcgcccgatagtgattttgtttcaaatgttcagcttcgaccaccactcaagtttcggt 41958333  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 4397370 - 4397433
Alignment:
Q  55 tgcttcaaatgcacagcttcgaccaccactcaagtttcggtaactc-gaggagacatcacaaca 117  Q
    ||||||||| | |||||||||||||||||||||||| ||||   || |||||||||||||||||    
T  4397370 tgcttcaaacgtacagcttcgaccaccactcaagttccggtctttcggaggagacatcacaaca 4397433  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 16285237 - 16285167
Alignment:
Q  25 agtgatcaattagacatccgatagtgataatgcttcaaatgcacagcttcgaccaccactcaagtttcggt 95  Q
    |||||| |||||| || |||||||||||  |||||||||||  |||||| |||||||||||||||| ||||    
T  16285237 agtgattaattaggcacccgatagtgattttgcttcaaatgttcagctttgaccaccactcaagttccggt 16285167  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 17324067 - 17324158
Alignment:
Q  25 agtgatcaattagacatccgatagtgataatgcttcaaatgcacagcttcgaccaccactcaagtttcggtaactc-gaggagacatcacaa 115  Q
    ||||||||||| |||| | |||||||||  ||||||||| |  |||||||||||||||||| |||| | |||  || |||||||||||||||    
T  17324067 agtgatcaattcgacacctgatagtgattttgcttcaaacgttcagcttcgaccaccactctagttccagtatatcggaggagacatcacaa 17324158  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 26500202 - 26500281
Alignment:
Q  42 ccgatagtgataatgcttcaaatgcacagcttcgaccaccactcaagtttcggtaactc-gaggagacatcacaacagcc 120  Q
    |||||| ||||  ||||||||| |  ||||||||||||||||||||||| ||||   || ||||||||||||||||||||    
T  26500202 ccgatattgattttgcttcaaacgttcagcttcgaccaccactcaagttccggtctatcggaggagacatcacaacagcc 26500281  T

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