View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19764_low_29 (Length: 220)
Name: NF19764_low_29
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19764_low_29 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 6068200 - 6068287
Alignment:
| Q |
115 |
tctagatgaatgtgaagccaagaaatatataatcaaattagtatatgatttgtgtagaataatggaagtaattatatcaggtggaatt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6068200 |
tctagatgaatgtgaagccaagaaatatataatcaaattagtatatgatttgtgtagaataatggaagtaattatatcaggtggaatt |
6068287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6068086 - 6068140
Alignment:
| Q |
1 |
aagacttaataaatgacctcatcttcaagcaataacactagagaattgtggatgg |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6068086 |
aagacttaataaatgacctcatcttcaagcaataacactagagaattgtggatgg |
6068140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University