View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19764_low_3 (Length: 587)
Name: NF19764_low_3
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19764_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 2 - 576
Target Start/End: Original strand, 35106346 - 35106920
Alignment:
| Q |
2 |
atatagtagttgtaccttcttaattaaatccatgctatatttctagtctaggcatgatggcaagtggagcaatcaatgtggtaagaggctcaaggtcatc |
101 |
Q |
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| T |
35106346 |
atatagtagttgtacctttttaattaaatccatgctatatttctagtctaggcatgatggcaagtggagcaatcaatgtggtaagaggctcaaggtcatc |
35106445 |
T |
|
| Q |
102 |
agttgaagagttattgcaaatatacaaccactctgaaaggttttggaaatgcctcaattcatagctagtcttaattggcacatccatattgtatggctaa |
201 |
Q |
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| T |
35106446 |
agttgaagagttattgcaaatatacaaccactctgaaaggttttggaaatgcctcaattcatagctagtcttaattggcacatccatattgtatgactaa |
35106545 |
T |
|
| Q |
202 |
gattgtgtgttataactgctaacaattctcaacaaattgttcattatatgttaaccttttgttttggcaatctttgttaatgctcaatcttcattggtga |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35106546 |
gattgtgtgttataactgctaacaattctcaacaaattgttcattatatgttaaccttttgttttggcaatcattgttaatgctcaatcttcattggtga |
35106645 |
T |
|
| Q |
302 |
cttcagtgttgcactagccgtggatggccctgaaatgtttatccgaattgcaaaaccattctattcaaagactggcatgagatttattattttgctttgg |
401 |
Q |
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| T |
35106646 |
cttcagtgttgcactagccgtggatggccctgaaatgtttaaccgaattgcaaaaccattctattcaaagactggcatgagatttattattttgctttgg |
35106745 |
T |
|
| Q |
402 |
ggagaaaaatcagacctgaatctgatcgctgaagaaaataaggaggtcccaatctttagtttcatggaagtcatagatttgggacgagagagtcgcatgg |
501 |
Q |
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| T |
35106746 |
ggagaaaaatcagacctgaatctgatcgctgaagaaaataaggaggtcccaatctttagtttcatggaagtcatagatttgggacgagagagtcgcatgg |
35106845 |
T |
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| Q |
502 |
cattgtctgattctcatgaagctagtaagtcgacttttttctcttcaaactcgggttatattatacttaagaatt |
576 |
Q |
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| T |
35106846 |
cattgtctgattctcatgaagctagtaagtcgacttttttctcttcaaactcgggttatattatacttaagaatt |
35106920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 38122011 - 38121916
Alignment:
| Q |
45 |
tagtctaggcatgatggcaagtggagcaatcaatgtggtaagaggctcaaggtcatcagttgaagagttattgcaaatatacaaccactctgaaag |
140 |
Q |
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| T |
38122011 |
tagtctaggcatgatggcaattggagcaatcaatgtggttaggggttcaaggtcatcaattgaagaactactgcaaatatacaaccactctgaaag |
38121916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 38135305 - 38135206
Alignment:
| Q |
45 |
tagtctaggcatgatggcaagtggagcaatcaatgtggtaagaggctcaaggtcatcagttgaagagttattgcaaatatacaaccactctgaaaggttt |
144 |
Q |
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| T |
38135305 |
tagtctaggtatgatggcaaccggagcaatcaatgttgttaggggttcaaggtcatcaattgaagaactgctgcaaatatacaaccactctgaaaggttt |
38135206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 413
Target Start/End: Complemental strand, 38121917 - 38121810
Alignment:
| Q |
306 |
agtgttgcactagccgtggatggccctgaaatgtttatccgaattgcaaaaccattctattcaaagactggcatgagatttattattttgctttggggag |
405 |
Q |
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|||||||||||||| ||||| |||||||||| || | |||||||||||||| |||| ||||| || |||||||||||| |||||||||||| |
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| T |
38121917 |
agtgttgcactagctgtggacaatcctgaaatgtataatcagattgcaaaaccattttatttgaagacctcaatcagatttattattctgctttggggag |
38121818 |
T |
|
| Q |
406 |
aaaaatca |
413 |
Q |
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|||||||| |
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| T |
38121817 |
aaaaatca |
38121810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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