View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19764_low_4 (Length: 565)
Name: NF19764_low_4
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19764_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 18478817 - 18478266
Alignment:
| Q |
1 |
aatgtaaagctaacctgcaacacaaaccaatagatgcagttacatttaaattattcaactttctcacattattatttgtgttgtgtccggtgttagtatg |
100 |
Q |
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| T |
18478817 |
aatgtaaagctaacctgcgacacaaaccaatagatgcagttacatttaaattattctactttctcacattattatctgtgttgtgtccgatgttagtatg |
18478718 |
T |
|
| Q |
101 |
aatgtatcaagttcttcgtaactttgtatttttgttggaacactcttacttattcttcttttttgactgataactttgtattttagttggaattctcttg |
200 |
Q |
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| T |
18478717 |
aatgtatcaagttcttcgtaactttgtatttttgttggaacactcttacttattcttcttttttgactgataactttgtattttagttggaattctcttg |
18478618 |
T |
|
| Q |
201 |
ttttttcttcttaaaaatccatttattt-gctttttcnnnnnnnntaaaacatgtgatacaataccttatgtgaccttgtctcattaggagtagggtttc |
299 |
Q |
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| T |
18478617 |
ttttttcttcttaaaaacacatttattttgctttttcaaaaaaaataaaacatgtgatacaatatcttatgtgaccttgtctcattaggagtagggtttc |
18478518 |
T |
|
| Q |
300 |
ttttatcgtttgtattctctcaaggttttagtgcttttggtaaatcactgtgcttcaaaattatatgtctctcttgttataacttcatagaaacaaaatc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18478517 |
ttttatcgtttgtattctctcaaggttttagtgcttttggtaaatcactgtgcttcaaaattatatatctctcttgttataacttcatagaaacaaaatc |
18478418 |
T |
|
| Q |
400 |
attaaaacaagtgcagtctccatgtaaataggttaatatacaaagatttccaaatagagaatatgaagaaagatccaaaagaatatctcacttgttcccg |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18478417 |
attaaaacaagtgcagtctccatgtaaataggttaatatacaaagatttccaaatagagaatatgaagaaagatccaaaagaatatctcacttgttcccg |
18478318 |
T |
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| Q |
500 |
agaagtgcatgaagctggataatattgtgatcttcttctgagctgaagtttc |
551 |
Q |
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| T |
18478317 |
agaagtgcatgaagctgaataatattgtgatcttcttctgagctgaagtttc |
18478266 |
T |
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