View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19764_low_5 (Length: 554)

Name: NF19764_low_5
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19764_low_5
NF19764_low_5
[»] chr1 (8 HSPs)
chr1 (17-233)||(19228360-19228576)
chr1 (17-95)||(34548911-34548989)
chr1 (448-538)||(19228579-19228669)
chr1 (18-94)||(46731622-46731698)
chr1 (18-96)||(4532550-4532628)
chr1 (18-94)||(26676450-26676526)
chr1 (18-94)||(33676969-33677045)
chr1 (24-62)||(31912028-31912066)
[»] chr4 (10 HSPs)
chr4 (23-95)||(37871127-37871199)
chr4 (23-92)||(23108253-23108322)
chr4 (18-94)||(48640285-48640361)
chr4 (18-94)||(47590928-47591004)
chr4 (23-94)||(56024596-56024667)
chr4 (23-96)||(9896973-9897046)
chr4 (18-95)||(43498857-43498934)
chr4 (18-72)||(7743155-7743209)
chr4 (18-82)||(39060184-39060247)
chr4 (23-60)||(30598707-30598744)
[»] scaffold0074 (1 HSPs)
scaffold0074 (17-96)||(23344-23423)
[»] chr8 (6 HSPs)
chr8 (17-95)||(13090249-13090327)
chr8 (17-96)||(4034763-4034842)
chr8 (18-95)||(45539875-45539952)
chr8 (23-62)||(8444729-8444768)
chr8 (18-93)||(9932569-9932644)
chr8 (18-72)||(24503637-24503691)
[»] chr6 (7 HSPs)
chr6 (17-95)||(12912722-12912800)
chr6 (17-96)||(18973085-18973166)
chr6 (17-96)||(24393463-24393542)
chr6 (23-94)||(6028880-6028951)
chr6 (18-58)||(30975342-30975382)
chr6 (18-58)||(30981781-30981821)
chr6 (18-58)||(30987945-30987985)
[»] chr2 (6 HSPs)
chr2 (18-96)||(27271207-27271285)
chr2 (44-90)||(11031352-11031398)
chr2 (18-72)||(29739686-29739740)
chr2 (18-72)||(12410370-12410424)
chr2 (18-72)||(12422430-12422484)
chr2 (18-72)||(37647548-37647602)
[»] scaffold0300 (1 HSPs)
scaffold0300 (23-96)||(9136-9209)
[»] chr7 (3 HSPs)
chr7 (23-95)||(17194358-17194430)
chr7 (18-62)||(1031817-1031861)
chr7 (18-74)||(40858493-40858549)
[»] chr5 (3 HSPs)
chr5 (18-94)||(26369408-26369484)
chr5 (18-73)||(22639141-22639196)
chr5 (18-62)||(19020983-19021027)
[»] chr3 (2 HSPs)
chr3 (18-94)||(10436904-10436980)
chr3 (18-94)||(15029632-15029708)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-104; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 19228360 - 19228576
Alignment:
Q  17 tccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattcaaagacattgtacaaaaactc 116  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  19228360 tccaaaaaaatcacaagagatgaataagtgttttgcatcttctatcgtaccgcatccacccatgcaaaactgaacattcaaagacattgtacaaaaactc 19228459  T
Q  117 attttagtcaacacaattgagaccaaaattttgcaccaacaatttaaaatttttagtttttggttggaagaggggaaaaagttgggaatgaaaagtgagg 216  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19228460 attttagtcaacacagttgagaccaaaattttgcaccaacaatttaaaatttttagtttttggttggaagaggggaaaaagttgggaatgaaaagtgagg 19228559  T
Q  217 ttaaagtgtgttgactt 233  Q
    |||||||||||||||||    
T  19228560 ttaaagtgtgttgactt 19228576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 34548989 - 34548911
Alignment:
Q  17 tccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattc 95  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||    
T  34548989 tccaaaaaaatcacaagagatgaataagtgttttgcgtcttctatcgtaccgcatccacccacgcataactgagcattc 34548911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 448 - 538
Target Start/End: Original strand, 19228579 - 19228669
Alignment:
Q  448 aacatttaaatagctacaaaaattgatttcattttnnnnnnntacgatattttattccaaaaatgaaaagattattttattttaattgcaa 538  Q
    |||||||||||||||||||||||| ||||||||||       |||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  19228579 aacatttaaatagctacaaaaattcatttcattttaaaaaaatacgatattttattacaaaaataaaaagattattttattttaattgcaa 19228669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 46731698 - 46731622
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 94  Q
    |||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||||||| |||||||||||    
T  46731698 ccaaaaaaatcacaagagaggaataagtgttttgcatcctccatcataccgcatccacccacgcataactgagcatt 46731622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 4532550 - 4532628
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 96  Q
    |||| |||||||||||||||||||||||||||||||||||||||| | ||||||||  ||||||| || ||| ||||||    
T  4532550 ccaaaaaaatcacaagagaggaataagtgttttgcatcttctatcatgccgcatccccccacgcataaatgaacattca 4532628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 26676526 - 26676450
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 94  Q
    |||| |||||||||||||||||||||||||||||||||  | ||| | ||||||||| ||||||| |||||||||||    
T  26676526 ccaaaaaaatcacaagagaggaataagtgttttgcatcccccatcatgccgcatccacccacgcataactgagcatt 26676450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 33676969 - 33677045
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 94  Q
    |||| ||||||||||||||||||||||||||||||||| || ||| | ||||||||| ||||||| || ||||||||    
T  33676969 ccaaaaaaatcacaagagaggaataagtgttttgcatcctccatcatgccgcatccacccacgcataattgagcatt 33677045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 31912028 - 31912066
Alignment:
Q  24 aaatcacaagagaggaataagtgttttgcatcttctatc 62  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  31912028 aaatcacaagagaggaataagtgttttacatcttctatc 31912066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 37871127 - 37871199
Alignment:
Q  23 aaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattc 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  37871127 aaaatcacaagagaggaataagtgttttgcatcttctatcgtaccacatccatccacgcataactgagcattc 37871199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 23108253 - 23108322
Alignment:
Q  23 aaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagca 92  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||||||||    
T  23108253 aaaatcacaagagaggaataagtgctttgcatcttttatcgtaccgcatccattcacgcataactgagca 23108322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 48640361 - 48640285
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 94  Q
    |||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||||||| |||||||||||    
T  48640361 ccaaaaaaatcacaagagaggaataagtgttttgcatcctccatcataccgcatccacccacgcataactgagcatt 48640285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 47590928 - 47591004
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 94  Q
    |||| ||||||||||||||||||||||||||||||||| || ||| |  |||||||| ||||||| |||||||||||    
T  47590928 ccaaaaaaatcacaagagaggaataagtgttttgcatcctccatcatgtcgcatccacccacgcataactgagcatt 47591004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 56024667 - 56024596
Alignment:
Q  23 aaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 94  Q
    ||||||| ||||||||||||||| ||||||||| || ||| ||||||||||| | |||||||||||||||||    
T  56024667 aaaatcaaaagagaggaataagtattttgcatcctccatcataccgcatccacctacgcaaaactgagcatt 56024596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 9896973 - 9897046
Alignment:
Q  23 aaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 96  Q
    ||||| |||||||||||||||||||||||||||||||||| | ||||||||| |||| || || || |||||||    
T  9896973 aaaattacaagagaggaataagtgttttgcatcttctatcatgccgcatccaaccacacataaatgtgcattca 9897046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 43498934 - 43498857
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattc 95  Q
    |||| |||||||||||||| ||||||||||||||||||||||||| | |||||||   |||||||||| ||| |||||    
T  43498934 ccaaaaaaatcacaagagatgaataagtgttttgcatcttctatcatgccgcatcgccccacgcaaaaatgaacattc 43498857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 7743209 - 7743155
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatc 72  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  7743209 ccaaaaaaatcacaagagatgaataagtgttttacatcttctatcataccgcatc 7743155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 39060184 - 39060247
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgca 82  Q
    |||| ||||||||||||||||||||||||||||||||| |||||| | ||| ||||| |||||||    
T  39060184 ccaaaaaaatcacaagagaggaataagtgttttgcatc-tctatcatgccggatccagccacgca 39060247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 30598707 - 30598744
Alignment:
Q  23 aaaatcacaagagaggaataagtgttttgcatcttcta 60  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  30598707 aaaatcacaagagaagaataagtgttatgcatcttcta 30598744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 23423 - 23344
Alignment:
Q  17 tccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 96  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  23423 tccaaaaaaatcacaagagaggaataagtgttttgcatcttctatcataccgcatccacccacgcataactgagcattca 23344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 13090249 - 13090327
Alignment:
Q  17 tccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattc 95  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  13090249 tccaaaaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcaaccacccacgcataactgagcattc 13090327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 4034763 - 4034842
Alignment:
Q  17 tccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 96  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| |||||||||||||    
T  4034763 tccaaaaaaatcacaagagaggaataagtgtttcgcatcttctatcgtaccgtatccacccacgcataactgagcattca 4034842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 45539952 - 45539875
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattc 95  Q
    |||| |||||||||||||||||||||||||||| ||||||||||| | |||||| || ||||||| || |||||||||    
T  45539952 ccaaaaaaatcacaagagaggaataagtgtttttcatcttctatcatgccgcatgcacccacgcataaatgagcattc 45539875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 8444729 - 8444768
Alignment:
Q  23 aaaatcacaagagaggaataagtgttttgcatcttctatc 62  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8444729 aaaatcacaagagaggaataagtgttttgcatcttctatc 8444768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 9932569 - 9932644
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcat 93  Q
    |||| ||||||||| ||||||||||| ||||||||||| || | | ||||||||||| ||||||| ||||||||||    
T  9932569 ccaaaaaaatcacaggagaggaataaatgttttgcatcctccagcataccgcatccacccacgcataactgagcat 9932644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 24503691 - 24503637
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatc 72  Q
    |||| |||||||||||||| ||||||||||||||||||||||||| | |||||||    
T  24503691 ccaaaaaaatcacaagagatgaataagtgttttgcatcttctatcatgccgcatc 24503637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 12912722 - 12912800
Alignment:
Q  17 tccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattc 95  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||    
T  12912722 tccaaaaaaatcacaagagaggaataagtgttttgcgtcttctatcgtaccgcatccacccacgcataactgagcattc 12912800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 18973085 - 18973166
Alignment:
Q  17 tccaagaaaatcacaagagaggaata--agtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 96  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  18973085 tccaaaaaaatcacaagagaggaatataagtgttttgcatcttctatcataccgcatccacccacgcataactgagcattca 18973166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 24393542 - 24393463
Alignment:
Q  17 tccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 96  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| || |||||    
T  24393542 tccaaaaaaagcacaagagaggaataagtgttttgcatcttctatcataccgcatccacccacgcataactaagtattca 24393463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 6028951 - 6028880
Alignment:
Q  23 aaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 94  Q
    |||||||||||||| |||||||||||| ||||| || ||| ||||||||||| |||||||||| ||||||||    
T  6028951 aaaatcacaagagatgaataagtgtttagcatcctccatcataccgcatccacccacgcaaaattgagcatt 6028880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 30975342 - 30975382
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttc 58  Q
    |||| |||||||||||||||||||||||| | |||||||||    
T  30975342 ccaaaaaaatcacaagagaggaataagtgctatgcatcttc 30975382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 30981781 - 30981821
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttc 58  Q
    |||| |||||||||||||||||||||||| | |||||||||    
T  30981781 ccaaaaaaatcacaagagaggaataagtgctatgcatcttc 30981821  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 30987945 - 30987985
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttc 58  Q
    |||| |||||||||||||||||||||||| | |||||||||    
T  30987945 ccaaaaaaatcacaagagaggaataagtgctatgcatcttc 30987985  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 27271285 - 27271207
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 96  Q
    |||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||| ||||||    
T  27271285 ccaaaaaaatcacaagagaggaataagtgttttgcatcttctatcatgccgcatccacccacgcataactgaacattca 27271207  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 11031398 - 11031352
Alignment:
Q  44 gtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgag 90  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  11031398 gtgttttgcatcttctatcgtaccgcatccacccacgcataactgag 11031352  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 29739740 - 29739686
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatc 72  Q
    |||| |||||||||||| |||||||||||||||||||| || |||||||||||||    
T  29739740 ccaaaaaaatcacaagaaaggaataagtgttttgcatcctccatcgtaccgcatc 29739686  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 12410424 - 12410370
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatc 72  Q
    |||| |||||||||||||| ||||||||||||||| ||||||||| | |||||||    
T  12410424 ccaaaaaaatcacaagagatgaataagtgttttgcctcttctatcatgccgcatc 12410370  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 12422484 - 12422430
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatc 72  Q
    |||| |||||||||||||| ||||||||||||||| ||||||||| | |||||||    
T  12422484 ccaaaaaaatcacaagagatgaataagtgttttgcctcttctatcatgccgcatc 12422430  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 37647602 - 37647548
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatc 72  Q
    |||| |||||||||||||| ||||||||||||||||||||| ||| | |||||||    
T  37647602 ccaaaaaaatcacaagagatgaataagtgttttgcatcttcgatcatgccgcatc 37647548  T

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Target: scaffold0300 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 9209 - 9136
Alignment:
Q  23 aaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 96  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||||||||  |||||||||| ||| ||||||    
T  9209 aaaatcacaagagaggaataaatgttttgcatcttctatcatgccgcatccccccacgcaaaaatgaacattca 9136  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 17194358 - 17194430
Alignment:
Q  23 aaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattc 95  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| | | |||| || |||| |||||||    
T  17194358 aaaatcacaagagaggaataagtgatttgcatcttctattgtaccgcaacgacccacacataactaagcattc 17194430  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 1031861 - 1031817
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatc 62  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||    
T  1031861 ccaaaaaaatgacaagagaggaataagtgttttgcatcttctatc 1031817  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 40858493 - 40858549
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatcca 74  Q
    |||| ||||||||||||||||||||||||||||||||| || ||| | |||||||||    
T  40858493 ccaaaaaaatcacaagagaggaataagtgttttgcatcctccatcatgccgcatcca 40858549  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 26369408 - 26369484
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 94  Q
    |||| ||||||||| ||||||||||| ||||||||||| || | | ||||||||||| ||||||| |||||||||||    
T  26369408 ccaaaaaaatcacaggagaggaataaatgttttgcatcctccagcataccgcatccacccacgcataactgagcatt 26369484  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 22639196 - 22639141
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatcc 73  Q
    |||| ||||||||||||||||||||| |||||||||||||||||| | ||||||||    
T  22639196 ccaaaaaaatcacaagagaggaataaatgttttgcatcttctatcatgccgcatcc 22639141  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 19021027 - 19020983
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatc 62  Q
    |||| |||||||||||||| |||||||||||||||||||||||||    
T  19021027 ccaaaaaaatcacaagagatgaataagtgttttgcatcttctatc 19020983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 10436904 - 10436980
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 94  Q
    |||| ||||||||| ||||||||||| ||||||||||| || | | ||||||||||| ||||||| |||||||||||    
T  10436904 ccaaaaaaatcacaggagaggaataaatgttttgcatcctccagcataccgcatccacccacgcataactgagcatt 10436980  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 15029708 - 15029632
Alignment:
Q  18 ccaagaaaatcacaagagaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 94  Q
    |||| |||||||| |||||| |||||||| || ||||| || ||| ||||||||||| |||||||||||||||||||    
T  15029708 ccaaaaaaatcactagagagaaataagtgcttagcatcctccatcataccgcatccacccacgcaaaactgagcatt 15029632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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