View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19764_low_7 (Length: 503)
Name: NF19764_low_7
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19764_low_7 |
 | |
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| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 32369048 - 32368546
Alignment:
| Q |
1 |
ctgaatgaatagaacataactgtgatatgcttatatgtagatgacctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacactatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32369048 |
ctgaatgaatagaacataactgtgatatgcttatatgtagatgacctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacactatgc |
32368949 |
T |
|
| Q |
101 |
agtgtgaatttgaaatgacttatttgggaagactatcatatttccttggattagaattcaaaactagcaatgcaggcatagtgatgcatcaacaaaagta |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
32368948 |
agtgtgaatttgaaatgacttatttaggaagactatcatatttccttggattagaattcaaaactagcaattcaagcatagtgatgcatcaacaaaagta |
32368849 |
T |
|
| Q |
201 |
cattggggaactgcttgaaaggtttcaaatgattaactgcaacattgcatcgaatccatctgaaacaaatgctaagttggatgaatgtactaatgaagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
32368848 |
cattggggaactgcttgaaaggtttcaaatgattgactgcaacattgcatcgaatccatctgaaacaaatgctaagttggatgagtgtactaatgaagaa |
32368749 |
T |
|
| Q |
301 |
agagtaaaacctactgaattcaaacagatagtgggatcactgaggtacttatgcaacagcaaaccagatatatcctttgcagtaagtatcatcggtaggt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32368748 |
agagtaaaacctactgaattcaaacagatagtgggatcattgatgtacttatgcaacaacaaaccagatatatcctttgcagtaagtatcatcggtaggt |
32368649 |
T |
|
| Q |
401 |
tcatgaatgatccaagcaaatctcatctcactgtagctaaaagaatactgagatatgtgaaaggaaccctgaagtttgccctgatgtttccagctactaa |
500 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32368648 |
tcatgaatgatccaaggaaatctcatctcactgtagctaaaagaatactgagatatgtgaaaggaaccctgaagtttgccctgatgtttccagctactaa |
32368549 |
T |
|
| Q |
501 |
caa |
503 |
Q |
| |
|
||| |
|
|
| T |
32368548 |
caa |
32368546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 8169354 - 8169181
Alignment:
| Q |
34 |
tatgtagatgacctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacactatgcagtgtgaatttgaaatgacttatttgggaagac |
133 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||| | || |||||| |
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|
| T |
8169354 |
tatgtggatgatctattagtaactggaagcaattaaagtgagattgagaaattcaaacacacaatgcagtgtgaatttaaaatgaccgacttaggaagat |
8169255 |
T |
|
| Q |
134 |
tatcatatttcctt-ggattagaattcaaaactagcaatgcaggcatagtgatgcatcaacaaaagtacattgg |
206 |
Q |
| |
|
| || ||||| || ||| | ||||||||||||| ||| ||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
8169254 |
tttcttatttttttaggaatggaattcaaaactatcaagctaggaatagttatgcatcaacaaaagtatattgg |
8169181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 503
Target Start/End: Complemental strand, 32368533 - 32368492
Alignment:
| Q |
462 |
aggaaccctgaagtttgccctgatgtttccagctactaacaa |
503 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
32368533 |
aggaaccctgaagtttggcacgatgtttccagctactaacaa |
32368492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 28 - 495
Target Start/End: Original strand, 26075952 - 26076419
Alignment:
| Q |
28 |
tgcttatatgtagatgacctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacactatgcagtgtgaatttgaaatgacttatttgg |
127 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |
|
|
| T |
26075952 |
tgcttatatgtagatgacttactagtaactggaagtaatccaagtgagattgagaagttcaaacacactatgaagtgtgagtttgaaatgactggtttgg |
26076051 |
T |
|
| Q |
128 |
gaagactatcatatttccttggattagaattcaaaactagcaatgcaggcatagtgatgcatcaacaaaagtacattggggaactgcttgaaaggtttca |
227 |
Q |
| |
|
||||| |||| |||||||||||||| || |||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
26076052 |
gaagattatcttatttccttggatttgagttcacaactagcaaagcaggcatagtgatgcatcaacagaagtacattggagaactgcttgaaagatttca |
26076151 |
T |
|
| Q |
228 |
aatgattaactgcaacattgcatcgaatccatctgaaacaaatgctaagttggatgaatgtactaatgaagaaagagtaaaacctactgaattcaaacag |
327 |
Q |
| |
|
||||||| | ||||| | |||||| ||||||||||||||||||||||| | |||||||||| ||||||||||| | | ||||||||||||||||| |
|
|
| T |
26076152 |
aatgattgattgcaataatgcatcaaatccatctgaaacaaatgctaaactagatgaatgtagtaatgaagaaaaggcggagtctactgaattcaaacag |
26076251 |
T |
|
| Q |
328 |
atagtgggatcactgaggtacttatgcaacagcaaaccagatatatcctttgcagtaagtatcatcggtaggttcatgaatgatccaagcaaatctcatc |
427 |
Q |
| |
|
|||||||||||||| || ||||||||||||| || ||||||||||| ||||||||||||||| ||| |||| ||||||||||||||||| || ||||||| |
|
|
| T |
26076252 |
atagtgggatcactaagatacttatgcaacaacagaccagatatatgctttgcagtaagtataatcagtagattcatgaatgatccaaggaagtctcatc |
26076351 |
T |
|
| Q |
428 |
tcactgtagctaaaagaatactgagatatgtgaaaggaaccctgaagtttgccctgatgtttccagct |
495 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| || ||||||||| |||| | ||||||||| |
|
|
| T |
26076352 |
tcactgcagctaaaagaatattgagatatgtgaaaggtacattgaagtttggcctgttatttccagct |
26076419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 28 - 483
Target Start/End: Complemental strand, 4958987 - 4958532
Alignment:
| Q |
28 |
tgcttatatgtagatgacctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacactatgcagtgtgaatttgaaatgacttatttgg |
127 |
Q |
| |
|
||||||| |||||||||| || | |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| | |||||| |
|
|
| T |
4958987 |
tgcttatttgtagatgacttactagtaactagaagtaatccaagtgagattgagaagttcaaacacactatgaagtgtgagtttgaaatgattgatttgg |
4958888 |
T |
|
| Q |
128 |
gaagactatcatatttccttggattagaattcaaaactagcaatgcaggcatagtgatgcatcaacaaaagtacattggggaactgcttgaaaggtttca |
227 |
Q |
| |
|
||||| |||| | |||||||||||| || |||| ||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||| ||||| |
|
|
| T |
4958887 |
gaagattatcttctttccttggatttgagttcacaactagcaaagcaggcatagtgatgcatcagcagaagtacattggagaactgcttgaaatatttca |
4958788 |
T |
|
| Q |
228 |
aatgattaactgcaacattgcatcgaatccatctgaaacaaatgctaagttggatgaatgtactaatgaagaaagagtaaaacctactgaattcaaacag |
327 |
Q |
| |
|
||||||| | ||||| | |||||| ||||||||||||||||||||||| | |||||||| | ||||||||||| || | ||||| ||||||||||| |
|
|
| T |
4958787 |
aatgattgattgcaataatgcatcaaatccatctgaaacaaatgctaaactagatgaatgcagtaatgaagaaaaggtggagtctactaaattcaaacag |
4958688 |
T |
|
| Q |
328 |
atagtgggatcactgaggtacttatgcaacagcaaaccagatatatcctttgcagtaagtatcatcggtaggttcatgaatgatccaagcaaatctcatc |
427 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| || |||| |||||| ||||||||||||||||||| |||| ||||||||||||||||| || | ||||| |
|
|
| T |
4958687 |
atagtgggatcattgagatacttatgcaacaacagaccatatatatgctttgcagtaagtatcatcagtagattcatgaatgatccaaggaagtttcatc |
4958588 |
T |
|
| Q |
428 |
tcactgtagctaaaagaatactgagatatgtgaaaggaaccctgaagtttgccctg |
483 |
Q |
| |
|
|||||| ||| ||||| ||| ||||| |||||||||| || |||||||||| |||| |
|
|
| T |
4958587 |
tcactgcagcaaaaaggatattgagacatgtgaaaggcacactgaagtttggcctg |
4958532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 30 - 478
Target Start/End: Original strand, 5242768 - 5243211
Alignment:
| Q |
30 |
cttatatgtagatgacctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacactatgcagtgtgaatttgaaatgacttatttggga |
129 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| | ||||||||| ||||||||||||||||||| |||||||||||||||| || |||| ||| |
|
|
| T |
5242768 |
cttatatgtagatgacctattggtgcctggaagcaatcgtaatgagattgaaaagttcaaacacactatgcggtgtgaatttgaaatgtctgattttgga |
5242867 |
T |
|
| Q |
130 |
agactatcatatttccttggattagaattcaaaactagcaatgcaggcatagtgatgcatcaacaaaagtacattggggaactgcttgaaaggtttcaaa |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||||| ||| || || ||||||||||||||||| ||||||||||||||||| ||| | | |
|
|
| T |
5242868 |
agactgtcatatttccttggattagaattcaaagccagcaatgtaggtattgtaatgcatcaacaaaagtatattggggaactgcttga----tttgata |
5242963 |
T |
|
| Q |
230 |
tgattaactgcaacattgcatcgaatccatctgaaacaaatgctaagttggatgaatgtactaatgaagaaagagtaaaacctactgaattcaaacagat |
329 |
Q |
| |
|
|| | | || |||| |||| | ||||| |||||||||||||||||| | |||||||| | |||||||| | |||| ||||||||||||||| ||||| |
|
|
| T |
5242964 |
tggtagattgtaacactgcaactaatccttctgaaacaaatgctaagctagatgaatgcatcaatgaagagaaagtagaacctactgaattcatgcagat |
5243063 |
T |
|
| Q |
330 |
agtgggatcactgaggtacttatgcaacagcaaaccagatatatcctttgcagtaagtatcatcggtaggttcatgaatgatccaagcaaatctcatctc |
429 |
Q |
| |
|
| | ||| || |||| |||||||| || || | ||||||||||| |||||||||||||||||| | || ||||||||||||||||| || ||||||||| |
|
|
| T |
5243064 |
aataggacca-tgagatacttatgtaatagtagaccagatatatgctttgcagtaagtatcattagaagattcatgaatgatccaaggaagtctcatctc |
5243162 |
T |
|
| Q |
430 |
actgtagctaaaagaatactgagatatgtgaaaggaaccctgaagtttg |
478 |
Q |
| |
|
|||| ||| |||| |||| ||||||||||||||||||| || ||||||| |
|
|
| T |
5243163 |
actgcagccaaaataataatgagatatgtgaaaggaactctaaagtttg |
5243211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 31 - 478
Target Start/End: Original strand, 1182509 - 1182956
Alignment:
| Q |
31 |
ttatatgtagatgacctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacactatgcagtgtgaatttgaaatgacttatttgggaa |
130 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| |||| |
|
|
| T |
1182509 |
ttatatgtgaatgagctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgatttaggaa |
1182608 |
T |
|
| Q |
131 |
gactatcatatttccttggattagaattcaaaactagcaatgcaggcatagtgatgcatcaacaaaagtacattggggaactgcttgaaaggtttcaaat |
230 |
Q |
| |
|
||| || |||||| | ||| | || || ||| ||||||| || | || |||||||| || ||||||||||| |||||||| |||| |||| | || |
|
|
| T |
1182609 |
aactctcttatttcttaggaatggagtttaaagctagcaagatgggaaaggttatgcatcatcagaagtacattggtgaactgctagaaaagtttgatat |
1182708 |
T |
|
| Q |
231 |
gattaactgcaacattgcatcgaatccatctgaaacaaatgctaagttggatgaatgtactaatgaagaaagagtaaaacctactgaattcaaacagata |
330 |
Q |
| |
|
|| | ||||||| || | ||||| |||||||||||||||||| |||||||||||| |||||||| | |||| || |||| ||||||||| |||| |
|
|
| T |
1182709 |
gacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggatgaatgtagcaatgaagagaaagtagaagctacataattcaaaccgata |
1182808 |
T |
|
| Q |
331 |
gtgggatcactgaggtacttatgcaacagcaaaccagatatatcctttgcagtaagtatcatcggtaggttcatgaatgatccaagcaaatctcatctca |
430 |
Q |
| |
|
|| ||||| ||||| | | ||||||| | || ||| ||||||| |||||| |||||||||||| |||| | |||||||||||| || ||||||||||||| |
|
|
| T |
1182809 |
gttggatctctgagatgcctatgcaataacagacctgatatatgctttgcggtaagtatcatcagtagatacatgaatgatcctaggaaatctcatctca |
1182908 |
T |
|
| Q |
431 |
ctgtagctaaaagaatactgagatatgtgaaaggaaccctgaagtttg |
478 |
Q |
| |
|
||| |||||||||| | || ||||||||||||||||| ||||||||| |
|
|
| T |
1182909 |
ctgcagctaaaagagtgctaagatatgtgaaaggaacaatgaagtttg |
1182956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 182 - 464
Target Start/End: Original strand, 12370521 - 12370803
Alignment:
| Q |
182 |
tgatgcatcaacaaaagtacattggggaactgcttgaaaggtttcaaatgattaactgcaacattgcatcgaatccatctgaaacaaatgctaagttgga |
281 |
Q |
| |
|
||||| |||| || ||||||||||| ||||||||||||| |||||||||||| | ||||| | |||||| ||||||||||||||||||||||| | || |
|
|
| T |
12370521 |
tgatgtatcagcagaagtacattggataactgcttgaaagatttcaaatgattgattgcaataatgcatcaaatccatctgaaacaaatgctaaactaga |
12370620 |
T |
|
| Q |
282 |
tgaatgtactaatgaagaaagagtaaaacctactgaattcaaacagatagtgggatcactgaggtacttatgcaacagcaaaccagatatatcctttgca |
381 |
Q |
| |
|
|||||| | ||||||||||| || | |||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
12370621 |
tgaatgcagtaatgaagaaaaggtggagtctactgaattcaaacatatagtgggatcactgagatacttatgcaacagcagaccagatatatgctttgca |
12370720 |
T |
|
| Q |
382 |
gtaagtatcatcggtaggttcatgaatgatccaagcaaatctcatctcactgtagctaaaagaatactgagatatgtgaaagg |
464 |
Q |
| |
|
|||||||||||| |||| | ||||||||||||||| || ||||||||||||| | | ||||| ||| |||||||||||||||| |
|
|
| T |
12370721 |
gtaagtatcatcagtagatgcatgaatgatccaaggaagtctcatctcactgcatcaaaaaggatattgagatatgtgaaagg |
12370803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 12368309 - 12368466
Alignment:
| Q |
28 |
tgcttatatgtagatgacctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacactatgcagtgtgaatttgaaatgacttatttgg |
127 |
Q |
| |
|
|||||||||||| ||||| || | |||||||||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
12368309 |
tgcttatatgtaaatgacttactagtaactggaagtaatccaactgagattgagaagttcaaacacactatgaagtgtgagtttgaaatgactgatttgg |
12368408 |
T |
|
| Q |
128 |
gaagactatcatatttccttggattagaattcaaaactagcaatgcaggcatagtgat |
185 |
Q |
| |
|
||||| |||| |||||||||||||| || |||| ||||||||| ||||||||| |||| |
|
|
| T |
12368409 |
gaagattatcctatttccttggatttgagttcacaactagcaaagcaggcataatgat |
12368466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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