View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19764_low_9 (Length: 405)

Name: NF19764_low_9
Description: NF19764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19764_low_9
NF19764_low_9
[»] chr2 (13 HSPs)
chr2 (73-243)||(20112315-20112485)
chr2 (313-389)||(39087536-39087612)
chr2 (300-389)||(38328652-38328741)
chr2 (313-389)||(38328211-38328287)
chr2 (313-389)||(38328510-38328586)
chr2 (313-389)||(38328820-38328896)
chr2 (313-389)||(39087853-39087927)
chr2 (313-365)||(38329073-38329125)
chr2 (313-389)||(39087691-39087774)
chr2 (313-389)||(38328028-38328097)
chr2 (344-389)||(38327904-38327949)
chr2 (351-389)||(38328965-38329003)
chr2 (199-244)||(3811506-3811551)
[»] chr6 (12 HSPs)
chr6 (113-244)||(5130298-5130429)
chr6 (113-237)||(26619708-26619832)
chr6 (113-237)||(26725621-26725745)
chr6 (313-389)||(26899717-26899793)
chr6 (313-389)||(26899863-26899939)
chr6 (313-376)||(21855330-21855393)
chr6 (313-374)||(21854845-21854906)
chr6 (313-376)||(26899575-26899638)
chr6 (313-360)||(21854705-21854752)
chr6 (313-359)||(21855022-21855068)
chr6 (313-359)||(21855193-21855239)
chr6 (313-349)||(26899957-26899993)
[»] chr4 (8 HSPs)
chr4 (113-239)||(1506787-1506913)
chr4 (313-391)||(11654308-11654386)
chr4 (313-389)||(11654518-11654594)
chr4 (313-389)||(54242899-54242975)
chr4 (313-352)||(54243054-54243093)
chr4 (344-376)||(49752305-49752337)
chr4 (313-373)||(11659188-11659250)
chr4 (344-376)||(49752423-49752455)
[»] scaffold0043 (1 HSPs)
scaffold0043 (117-241)||(69194-69318)
[»] chr1 (1 HSPs)
chr1 (117-241)||(9392501-9392625)
[»] chr3 (20 HSPs)
chr3 (117-240)||(5836072-5836194)
chr3 (117-241)||(2746239-2746363)
chr3 (313-389)||(36946499-36946575)
chr3 (117-240)||(5939463-5939585)
chr3 (313-391)||(55369825-55369903)
chr3 (313-389)||(55369662-55369738)
chr3 (313-375)||(40822886-40822948)
chr3 (313-391)||(49067815-49067893)
chr3 (313-386)||(53927341-53927414)
chr3 (313-389)||(53927595-53927671)
chr3 (313-391)||(40822722-40822800)
chr3 (313-375)||(53927197-53927259)
chr3 (313-389)||(36946656-36946732)
chr3 (313-373)||(40822567-40822627)
chr3 (313-389)||(40822259-40822340)
chr3 (313-391)||(53927026-53927104)
chr3 (313-358)||(40822419-40822464)
chr3 (351-389)||(40822142-40822180)
chr3 (351-389)||(49067981-49068019)
chr3 (351-391)||(48313932-48313972)
[»] chr5 (20 HSPs)
chr5 (313-389)||(38096734-38096810)
chr5 (313-389)||(17547483-17547559)
chr5 (313-389)||(41041844-41041920)
chr5 (313-376)||(17547646-17547709)
chr5 (313-391)||(32719330-32719408)
chr5 (313-390)||(17414236-17414313)
chr5 (313-389)||(35393547-35393623)
chr5 (300-391)||(17547317-17547408)
chr5 (313-391)||(41041678-41041756)
chr5 (313-389)||(41042015-41042098)
chr5 (313-377)||(35393413-35393477)
chr5 (313-377)||(35394038-35394102)
chr5 (313-359)||(38096618-38096664)
chr5 (313-358)||(38096904-38096949)
chr5 (313-387)||(35394182-35394261)
chr5 (344-389)||(32719197-32719242)
chr5 (344-376)||(17547801-17547833)
chr5 (344-389)||(38097079-38097124)
chr5 (349-389)||(35393702-35393742)
chr5 (344-372)||(41042194-41042222)
[»] chr7 (21 HSPs)
chr7 (313-387)||(2733520-2733594)
chr7 (313-391)||(16718152-16718230)
chr7 (313-391)||(17692362-17692440)
chr7 (313-386)||(2734132-2734205)
chr7 (313-389)||(2733673-2733749)
chr7 (313-389)||(2734266-2734342)
chr7 (313-389)||(15236573-15236649)
chr7 (313-389)||(34406800-34406876)
chr7 (313-376)||(15236424-15236487)
chr7 (300-391)||(15236724-15236815)
chr7 (313-391)||(34406227-34406305)
chr7 (313-373)||(16717997-16718057)
chr7 (313-373)||(17692207-17692267)
chr7 (313-389)||(34406488-34406562)
chr7 (313-361)||(2733863-2733911)
chr7 (313-389)||(2733972-2734041)
chr7 (313-359)||(36157961-36158007)
chr7 (340-387)||(16717804-16717851)
chr7 (340-387)||(17692014-17692061)
chr7 (313-374)||(34406656-34406721)
chr7 (344-376)||(15236300-15236332)
[»] scaffold0090 (6 HSPs)
scaffold0090 (313-389)||(13790-13866)
scaffold0090 (313-389)||(13944-14020)
scaffold0090 (313-389)||(14099-14175)
scaffold0090 (316-391)||(13323-13398)
scaffold0090 (313-375)||(13494-13563)
scaffold0090 (313-389)||(13642-13711)
[»] chr8 (5 HSPs)
chr8 (313-375)||(16913900-16913962)
chr8 (313-389)||(41843894-41843970)
chr8 (317-391)||(41843728-41843802)
chr8 (313-373)||(41844109-41844169)
chr8 (344-389)||(14994092-14994137)
[»] scaffold0246 (2 HSPs)
scaffold0246 (311-391)||(9541-9621)
scaffold0246 (313-388)||(9700-9775)
[»] scaffold0891 (2 HSPs)
scaffold0891 (313-359)||(2007-2053)
scaffold0891 (313-362)||(1843-1892)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 73 - 243
Target Start/End: Original strand, 20112315 - 20112485
Alignment:
Q  73 taatcacttttctccaaaacaactgatttcagcat-tttgcttctgcttctaactttctgcattaccacttcaaaacaaacacttattcagcccattaaa 171  Q
    ||||||||| |||||||||||||| ||||| || | ||||||||||||||||||||| ||| || | |||||||| ||||| |||||||||||||| |||    
T  20112315 taatcacttctctccaaaacaacttatttcggcttatttgcttctgcttctaacttt-tgcctttcaacttcaaaccaaactcttattcagcccataaaa 20112413  T
Q  172 catacatattaagttctggaaccattcaaccaacttaaactcacgttttagcttatttcggaaaaatccatg 243  Q
    |||||||||||||||||||||||||||||  | ||||||||||| |||||||||||| ||||||||||||||    
T  20112414 catacatattaagttctggaaccattcaataatcttaaactcactttttagcttattccggaaaaatccatg 20112485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 39087612 - 39087536
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  39087612 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccggacgctaactgtt 39087536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 300 - 389
Target Start/End: Original strand, 38328652 - 38328741
Alignment:
Q  300 ttaattaacttcttttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||| ||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  38328652 ttaattaagttaatttaatcaaaatcttattttcaaatggagagatctcttatctcttatttattaaagttaacccggacgttaactgtt 38328741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 38328211 - 38328287
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||    
T  38328211 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttgttaaagttaacccggacgttaactgtt 38328287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 38328510 - 38328586
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||| ||||||||    
T  38328510 tttaaccaaaatcttattttcaaacggagagatctcttatctctcttttattaaagttaacccggacgttaactgtt 38328586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 38328820 - 38328896
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||||||    
T  38328820 tttaatcaaaatcttatttttaaacggagagatctcatatatcttatttattaaagttaacccggacgttaactgtt 38328896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 39087927 - 39087853
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||  ||||||||    
T  39087927 tttaatcaaaatcttattttcaaacggagagatctctta--tcttatttattaaagttaacccggacattaactgtt 39087853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 38329073 - 38329125
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttatta 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38329073 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttatta 38329125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 39087774 - 39087691
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctc-------ttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||| ||||||||    
T  39087774 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatctcttatttattaaagttaacccgaacgttaactgtt 39087691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 38328028 - 38328097
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| ||| ||||||||    
T  38328028 tttaatcaaaatcttattttcaaacggagag-------atctcttatttattaaagttaacccggacgctaactgtt 38328097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 38327904 - 38327949
Alignment:
Q  344 atctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  38327904 atctcttatctcttatttattaaagttaacccggacgttaattgtt 38327949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 389
Target Start/End: Original strand, 38328965 - 38329003
Alignment:
Q  351 atctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  38328965 atctcttatttattaaagttaacccggacgttaactgtt 38329003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 3811551 - 3811506
Alignment:
Q  199 aaccaacttaaactcacgttttagcttatttcggaaaaatccatgt 244  Q
    |||||||||||| || ||||||||||||||||| |||| |||||||    
T  3811551 aaccaacttaaaatctcgttttagcttatttcgaaaaagtccatgt 3811506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 113 - 244
Target Start/End: Complemental strand, 5130429 - 5130298
Alignment:
Q  113 ttctgcttctaactttctgcattaccacttcaaaacaaacacttattcagcccattaaacatacatattaagttctggaaccattcaaccaacttaaact 212  Q
    |||||||| |||||||||| ||| | |||| |||||||||| ||||||||||| || ||||||||||||||||||||||  |||||| |||||||| | |    
T  5130429 ttctgcttttaactttctgtatttcaacttgaaaacaaacaattattcagccctttgaacatacatattaagttctggagtcattcacccaacttagatt 5130330  T
Q  213 cacgttttagcttatttcggaaaaatccatgt 244  Q
    ||||||||||||||||||||||||||| ||||    
T  5130329 cacgttttagcttatttcggaaaaatctatgt 5130298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 113 - 237
Target Start/End: Complemental strand, 26619832 - 26619708
Alignment:
Q  113 ttctgcttctaactttctgcattaccacttcaaaacaaacacttattcagcccattaaacatacatattaagttctggaaccattcaaccaacttaaact 212  Q
    |||||||| |||||||||| ||| | |||| |||||||||||||||||||||| || ||||||||||||||||||||||  |||||| |||||||| | |    
T  26619832 ttctgcttttaactttctgtatttcaacttgaaaacaaacacttattcagccctttgaacatacatattaagttctggagtcattcacccaacttagatt 26619733  T
Q  213 cacgttttagcttatttcggaaaaa 237  Q
     ||| ||||||||||||||||||||    
T  26619732 aacgctttagcttatttcggaaaaa 26619708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 113 - 237
Target Start/End: Complemental strand, 26725745 - 26725621
Alignment:
Q  113 ttctgcttctaactttctgcattaccacttcaaaacaaacacttattcagcccattaaacatacatattaagttctggaaccattcaaccaacttaaact 212  Q
    |||||||| |||||||||| ||| | |||| |||||||||||||||||||||| || ||||||||||||||||||||||  |||||| |||||||| | |    
T  26725745 ttctgcttttaactttctgtatttcaacttgaaaacaaacacttattcagccctttgaacatacatattaagttctggagtcattcacccaacttagatt 26725646  T
Q  213 cacgttttagcttatttcggaaaaa 237  Q
     ||| ||||||||||||||||||||    
T  26725645 aacgctttagcttatttcggaaaaa 26725621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 26899793 - 26899717
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||    
T  26899793 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccggatgctaactgtt 26899717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 26899939 - 26899863
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| ||||    
T  26899939 tttaatcaaaatcttattttcaaacggagagatctcttatatcttatttattaaagttaacccgaacgttaagtgtt 26899863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 21855393 - 21855330
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccg 376  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21855393 tttaatcaaaatcttattttcaaacggagatatctcttatctcttatttattaaagttaacccg 21855330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 21854906 - 21854845
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacc 374  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21854906 tttaatcaaaatcttattttcaaacggagatatctcttatctcttatttattaaagttaacc 21854845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 26899638 - 26899575
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccg 376  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26899638 tttaatcaaaaacttattttcaaacagagagatctcttatctcttatttattaaagttaacccg 26899575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 21854752 - 21854705
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21854752 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatt 21854705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 21855068 - 21855022
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttat 359  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  21855068 tttaatcaaaatcttattttcaaacggagagatttcttatctcttat 21855022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 21855239 - 21855193
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttat 359  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  21855239 tttaatcaaaatcttattttcaaacgaagagatctcttatctcttat 21855193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 26899993 - 26899957
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctct 349  Q
    ||||||||||||||||||||||||| |||||||||||    
T  26899993 tttaatcaaaatcttattttcaaacagagagatctct 26899957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 1506787 - 1506913
Alignment:
Q  113 ttctgcttctaactttctgcattaccacttcaaaacaaacacttattcagcccattaaacatacatattaagttctggaaccattcaaccaacttaaact 212  Q
    |||||||| |||||||||| ||| | |||| |||||||||||||||||||||| || ||||||||||||||||||||||  |||||| |||||||| | |    
T  1506787 ttctgcttttaactttctgtatttcaacttgaaaacaaacacttattcagccctttgaacatacatattaagttctggagtcattcacccaacttagatt 1506886  T
Q  213 cacgttttagcttatttcggaaaaatc 239  Q
    |||||||||||||||||| ||||||||    
T  1506887 cacgttttagcttatttcagaaaaatc 1506913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 11654386 - 11654308
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||    
T  11654386 tttaatcacaattttattttcaaacggagagatctcttatctcttatttattaaagttaacccggatgctaactgtttc 11654308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 11654594 - 11654518
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | | ||||||||    
T  11654594 tttaatcaaaatcttattttcaaacggagagatcttttatctattatttattaaagttaacccggatgttaactgtt 11654518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 54242899 - 54242975
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  54242899 tttaatcaaaatcttattttcaaatggaaagatctcttatctcttatttattaaagttaacccagacgctaactgtt 54242975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 54243054 - 54243093
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttat 352  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  54243054 tttaatcaaaatcttattttctaacggagagatctcttat 54243093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 49752337 - 49752305
Alignment:
Q  344 atctcttatctcttatttattaaagttaacccg 376  Q
    |||||||||||||||||||||||||||||||||    
T  49752337 atctcttatctcttatttattaaagttaacccg 49752305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 11659250 - 11659188
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttat--ctcttatttattaaagttaac 373  Q
    |||||||||||| |||||||||||||||||||| |||| |   |||||| |||||||||||||    
T  11659250 tttaatcaaaattttattttcaaacggagagatatcttcttcttcttatatattaaagttaac 11659188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 49752455 - 49752423
Alignment:
Q  344 atctcttatctcttatttattaaagttaacccg 376  Q
    |||| ||||||||||||||||||||||||||||    
T  49752455 atcttttatctcttatttattaaagttaacccg 49752423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 117 - 241
Target Start/End: Complemental strand, 69318 - 69194
Alignment:
Q  117 gcttctaactttctgcattaccacttcaaaacaaacacttattcagcccattaaacatacatattaagttctggaaccattcaaccaacttaaactcacg 216  Q
    |||||||||||| || ||| | ||||||||||||||||||||||| ||| || |||||| ||||||||||||||||||||||  |||| ||||| |||||    
T  69318 gcttctaactttatgtatttcaacttcaaaacaaacacttattcaaccctttgaacatatatattaagttctggaaccattcccccaatttaaattcacg 69219  T
Q  217 ttttagcttatttcggaaaaatcca 241  Q
    ||||||||||||||||| |||||||    
T  69218 ttttagcttatttcggacaaatcca 69194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 117 - 241
Target Start/End: Original strand, 9392501 - 9392625
Alignment:
Q  117 gcttctaactttctgcattaccacttcaaaacaaacacttattcagcccattaaacatacatattaagttctggaaccattcaaccaacttaaactcacg 216  Q
    ||||||||| |||| |||| | ||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |||  |||| ||||| |||||    
T  9392501 gcttctaacattctacatttcaacttcaaaacaaacacttattcagccctttgaacatacatatcaagttctggaacctttcgcccaatttaaattcacg 9392600  T
Q  217 ttttagcttatttcggaaaaatcca 241  Q
    ||||||||||||||| |||||||||    
T  9392601 ttttagcttatttcgaaaaaatcca 9392625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 5836072 - 5836194
Alignment:
Q  117 gcttctaactttctgcattaccacttcaaaacaaacacttattcagcccattaaacatacatattaagttctggaaccattcaaccaacttaaactcacg 216  Q
    ||||| ||||||||||||| | ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||| ||||| |||||    
T  5836072 gcttccaactttctgcatttcaact-caaaacaaacacttattcagccctttgaacatacatattaagttctggaaccattcacacaatttaaattcacg 5836170  T
Q  217 ttttagcttatttcggaaaaatcc 240  Q
    |||||||||||| | |||||||||    
T  5836171 ttttagcttattacagaaaaatcc 5836194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 117 - 241
Target Start/End: Complemental strand, 2746363 - 2746239
Alignment:
Q  117 gcttctaactttctgcattaccacttcaaaacaaacacttattcagcccattaaacatacatattaagttctggaaccattcaaccaacttaaactcacg 216  Q
    |||||||||||| || ||| | ||||||||||||||||||||||| ||| || |||||| ||||||||||| ||||||||||  |||| ||||| |||||    
T  2746363 gcttctaactttatgtatttcaacttcaaaacaaacacttattcaaccctttgaacatatatattaagttccggaaccattcccccaatttaaattcacg 2746264  T
Q  217 ttttagcttatttcggaaaaatcca 241  Q
    ||||||||||||||||| |||||||    
T  2746263 ttttagcttatttcggacaaatcca 2746239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 36946575 - 36946499
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  36946575 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccggacgctaactgtt 36946499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 5939463 - 5939585
Alignment:
Q  117 gcttctaactttctgcattaccacttcaaaacaaacacttattcagcccattaaacatacatattaagttctggaaccattcaaccaacttaaactcacg 216  Q
    ||||| || |||||||||| | ||| ||||||||||||||||||||||| |  |||||||||||||||||||||||| |||||  ||| ||||| |||||    
T  5939463 gcttccaattttctgcatttcaact-caaaacaaacacttattcagcccttcgaacatacatattaagttctggaactattcacacaatttaaattcacg 5939561  T
Q  217 ttttagcttatttcggaaaaatcc 240  Q
    ||||||||||||||||||||||||    
T  5939562 ttttagcttatttcggaaaaatcc 5939585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 313 - 391
Target Start/End: Original strand, 55369825 - 55369903
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||    
T  55369825 tttaatcaaaatcttattttcaaacggagagatatcttatctcttatttattaaagttaacccggacgctaactgtttc 55369903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 55369662 - 55369738
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  55369662 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaatccggacgctaactgtt 55369738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 40822886 - 40822948
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaaccc 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40822886 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaaccc 40822948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 49067893 - 49067815
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  49067893 tttaatcaaaattttattttcaaacgaagagatctcttatctcttatttattaaagttaacccggacgctaactgtttc 49067815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 313 - 386
Target Start/End: Complemental strand, 53927414 - 53927341
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataact 386  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  53927414 tttaatcaaaaacttattttcaaacggagagatctcttatctcttatttattaaagttaacccggacgttaact 53927341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 53927671 - 53927595
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| ||||||||    
T  53927671 tttaatcaaaatcttattttcaaacggagagatctcttatatcttatttattacagttaacccggacgctaactgtt 53927595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 313 - 391
Target Start/End: Original strand, 40822722 - 40822800
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||  ||| ||||||||||    
T  40822722 tttaatcaaaatcttattttcaaatggagagatctcttatcttttatttattaaagttaacccagacgttaactgtttc 40822800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 313 - 375
Target Start/End: Complemental strand, 53927259 - 53927197
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaaccc 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53927259 tttaatcaaaatcttattttcaaacggagagatctcttatctcttattttttaaagttaaccc 53927197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 36946732 - 36946656
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||| ||||||||    
T  36946732 tttaatcaaaatcttattttcaaactgagagatctcttacctcttatttattaaaattaacccggacgctaactgtt 36946656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 40822567 - 40822627
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaac 373  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40822567 tttaatcaaaatcttattttcaaacgcagagatctcttatctcttatttattaaagttaac 40822627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 40822259 - 40822340
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctctta-----tctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||| ||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||| ||| ||||||||    
T  40822259 tttaattaaaatcttattttcaaacggagagatctcttatctcttctcttatttattaaagttaacccggacgttaactgtt 40822340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 53927104 - 53927026
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    |||||||||||| |||||||||||| ||||||||||| ||||  |||||||||||||||||||| | | ||||||||||    
T  53927104 tttaatcaaaattttattttcaaacagagagatctctaatctaatatttattaaagttaacccggatgctaactgtttc 53927026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 40822419 - 40822464
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctctta 358  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||    
T  40822419 tttaatcaaaatcttattttcaaacgaagagatctcttatttctta 40822464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 389
Target Start/End: Original strand, 40822142 - 40822180
Alignment:
Q  351 atctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  40822142 atctcttatttattaaagttaacccggacgctaactgtt 40822180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 389
Target Start/End: Complemental strand, 49068019 - 49067981
Alignment:
Q  351 atctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  49068019 atctcttatttattaaagttaacccggacgttaactgtt 49067981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 48313932 - 48313972
Alignment:
Q  351 atctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    |||||||||||||||||||||||||| ||| | ||||||||    
T  48313932 atctcttatttattaaagttaacccgaacgctgactgtttc 48313972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 38096810 - 38096734
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  38096810 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccggacgttaactgtt 38096734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 17547559 - 17547483
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  17547559 tttaatcaaaatcttattttcaaacggagagatatcttatctcttatttattaaagttaacccggacgttaactgtt 17547483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 41041920 - 41041844
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  41041920 tttaatcaaaatcttattttcaaacggagagatcttttatctcttatttattaaagttaacccggacgttaactgtt 41041844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 17547709 - 17547646
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccg 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17547709 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccg 17547646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 313 - 391
Target Start/End: Original strand, 32719330 - 32719408
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  ||||||||||    
T  32719330 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaatccgaacactaactgtttc 32719408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 313 - 390
Target Start/End: Complemental strand, 17414313 - 17414236
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgttt 390  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| |||||||||    
T  17414313 tttaatcaaaatcttattttcaaatggagagatctcttatctcttatttattaaagttaacctggacgctaactgttt 17414236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 35393623 - 35393547
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  35393623 tttaatcaaaatcttattttcaaacagagagatatcttatctcttatttattaaagttaacccggacgctaactgtt 35393547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 391
Target Start/End: Complemental strand, 17547408 - 17547317
Alignment:
Q  300 ttaattaacttcttttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    |||||| | ||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| ||| ||||||||||    
T  17547408 ttaatttaattcatttaatcaaaatcttattttcaaacggatagatctcttatctcatatttattaaagttaatccggacgctaactgtttc 17547317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 41041756 - 41041678
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || | |||| |||||||    
T  41041756 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttaataaagttaacgcggatgatacctgtttc 41041678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 41042098 - 41042015
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctc-------ttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||| ||||||||    
T  41042098 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatctcttatttattaaagttaacccggacgttaactgtt 41042015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 35393477 - 35393413
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgt 377  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||| | |||||||||||||    
T  35393477 tttaatcaaaatcttattttcaaacggagagatatcttatttcttatttctaaaagttaacccgt 35393413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 35394102 - 35394038
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgt 377  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||| | |||||||||||||    
T  35394102 tttaatcaaaatcttattttcaaactaagagatctcttatctcttatttctaaaagttaacccgt 35394038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 38096664 - 38096618
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttat 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38096664 tttaatcaaaatcttattttcaaacggagagatctcttatctcttat 38096618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 38096949 - 38096904
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctctta 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38096949 tttaatcaaaatcttattttcaaacggagagatctcttatctctta 38096904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 35394261 - 35394182
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagag-----atctcttatctcttatttattaaagttaacccgtacgataactg 387  Q
    ||||| ||||||||||||||||||| ||||      ||||||||||||||||||||||||||||||||| ||| ||||||    
T  35394261 tttaaacaaaatcttattttcaaacagagatctcttatctcttatctcttatttattaaagttaacccgaacgctaactg 35394182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 32719197 - 32719242
Alignment:
Q  344 atctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||||    
T  32719197 atctcttatctcttattaattaaagttaacccggacgttaactgtt 32719242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 17547833 - 17547801
Alignment:
Q  344 atctcttatctcttatttattaaagttaacccg 376  Q
    |||||||||||||||||||||||||||||||||    
T  17547833 atctcttatctcttatttattaaagttaacccg 17547801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 389
Target Start/End: Complemental strand, 38097124 - 38097079
Alignment:
Q  344 atctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||  || ||| ||||||||    
T  38097124 atctcttatctcttatttattaaagttaaatcggacgctaactgtt 38097079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 35393742 - 35393702
Alignment:
Q  349 ttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||||||||| |||||||| ||| ||||||||    
T  35393742 ttatctcttatttattaaatttaacccggacgctaactgtt 35393702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 372
Target Start/End: Complemental strand, 41042222 - 41042194
Alignment:
Q  344 atctcttatctcttatttattaaagttaa 372  Q
    |||||||||||||||||||||||||||||    
T  41042222 atctcttatctcttatttattaaagttaa 41042194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 2733594 - 2733520
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactg 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  2733594 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccggacgctaactg 2733520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 313 - 391
Target Start/End: Original strand, 16718152 - 16718230
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  16718152 tttaatcaaaatcttattttcaaacggagaaatctcttatctcttatttattaaagttaacccggacgctaactgtttc 16718230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 313 - 391
Target Start/End: Original strand, 17692362 - 17692440
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  17692362 tttaatcaaaatcttattttcaaacggagaaatctcttatctcttatttattaaagttaacccggacgctaactgtttc 17692440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 313 - 386
Target Start/End: Complemental strand, 2734205 - 2734132
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataact 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  2734205 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccggacgttaact 2734132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 2733749 - 2733673
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||    
T  2733749 tttaatcaaaatcttattttcaaacggagagatctcatatctcttatttattaaagttaacccggacgttaactgtt 2733673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 2734342 - 2734266
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||    
T  2734342 tttaatcaaaatcttattttcaaacggagatatctcttatctcttatttattaaagttaacccggacgctaactgtt 2734266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 15236573 - 15236649
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  15236573 tttaatcaaaatcttattttcaaacggagagatatcttatctcttatttattaaagttaacccggacgttaactgtt 15236649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 34406876 - 34406800
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  34406876 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaactcggacgttaactgtt 34406800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 15236424 - 15236487
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccg 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15236424 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccg 15236487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 391
Target Start/End: Original strand, 15236724 - 15236815
Alignment:
Q  300 ttaattaacttcttttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    |||||| | ||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| ||| ||||||||||    
T  15236724 ttaatttaattcatttaatcaaaatcttattttcaaacggatagatctcttatctcatatttattaaagttaatccggacgctaactgtttc 15236815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 34406305 - 34406227
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | | ||||||||||    
T  34406305 tttaatcaaaatcttattttcaaacggagagatgtcttatatcttatttattaaagttaacccggaagctaactgtttc 34406227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 16717997 - 16718057
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaac 373  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16717997 tttaatcaaaatcttattttaaaacggagagatctcttatctcttatttattaaagttaac 16718057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 17692207 - 17692267
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaac 373  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  17692207 tttaatcaaaatcttattttaaaacggagagatctcttatctcttatttattacagttaac 17692267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 34406562 - 34406488
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||| ||||||||||||||| ||| ||||||||    
T  34406562 tttaatcaaaatcttattttcaaacggagatatct--tatctcttattaattaaagttaacccgaacgttaactgtt 34406488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 2733911 - 2733863
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttattt 361  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2733911 tttaatcaaaatcttatttttaaacggagagatctcttatctcttattt 2733863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 2734041 - 2733972
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| ||| ||||||||    
T  2734041 tttaatcaaaatcttattttcaaacggaga-------tatctcttatttattaaagttaacccggacgctaactgtt 2733972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 36157961 - 36158007
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttat 359  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||    
T  36157961 tttaatcaaaatcttattttcaaacggagatatcttttatctcttat 36158007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 387
Target Start/End: Original strand, 16717804 - 16717851
Alignment:
Q  340 agagatctcttatctcttatttattaaagttaacccgtacgataactg 387  Q
    ||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  16717804 agagatctcttatctcttatttattaaagttgacccggacgctaactg 16717851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 387
Target Start/End: Original strand, 17692014 - 17692061
Alignment:
Q  340 agagatctcttatctcttatttattaaagttaacccgtacgataactg 387  Q
    ||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  17692014 agagatctcttatctcttatttattaaagttgacccggacgctaactg 17692061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 34406721 - 34406656
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatc-----tcttatttattaaagttaacc 374  Q
    ||||||||||| ||||| |||||||||||||||||||||||     |||||||||||||||||||||    
T  34406721 tttaatcaaaa-cttatgttcaaacggagagatctcttatctcttctcttatttattaaagttaacc 34406656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 15236300 - 15236332
Alignment:
Q  344 atctcttatctcttatttattaaagttaacccg 376  Q
    |||||||||||||||||||||||||||||||||    
T  15236300 atctcttatctcttatttattaaagttaacccg 15236332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 13866 - 13790
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||    
T  13866 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccggacactaactgtt 13790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 14020 - 13944
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  14020 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccagacgctaactgtt 13944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 14175 - 14099
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||    
T  14175 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagataacccggacgctgactgtt 14099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 316 - 391
Target Start/End: Complemental strand, 13398 - 13323
Alignment:
Q  316 aatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||  ||| ||||||||||    
T  13398 aatcaaaatcttattttcaaacagagagatctcttagctcttatttattaaagttaacccagacgctaactgtttc 13323  T

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Target: scaffold0090; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 313 - 375
Target Start/End: Complemental strand, 13563 - 13494
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatc-------tcttatctcttatttattaaagttaaccc 375  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  13563 tttaatcaaaatcttattttcaaacggagagatcccttatctcttatctcttatttattaaagttaaccc 13494  T

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Target: scaffold0090; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 13711 - 13642
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||| ||||||||    
T  13711 tttaatcaaaatcttattttcaaacggagagatctc-------ttatttattaaagttaacccggacgctaactgtt 13642  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 313 - 375
Target Start/End: Complemental strand, 16913962 - 16913900
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaaccc 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16913962 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaaccc 16913900  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 41843970 - 41843894
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||| ||||||||    
T  41843970 tttaatcaaaatcttattttcaaacagaaagatctcttatctcttatttattaaaattaacccggacgctaactgtt 41843894  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 317 - 391
Target Start/End: Complemental strand, 41843802 - 41843728
Alignment:
Q  317 atcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||| ||||||||||    
T  41843802 atcaaaatcttattttcaaacagaaagatctcttatctcttatttattaaagttaaccccgacggtaactgtttc 41843728  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 41844169 - 41844109
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaac 373  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41844169 tttaattaaaatcttattttcaaacggagatatctcttatctcttatttattaaagttaac 41844109  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 389
Target Start/End: Complemental strand, 14994137 - 14994092
Alignment:
Q  344 atctcttatctcttatttattaaagttaacccgtacgataactgtt 389  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||||    
T  14994137 atctcttatctctgatttattaaagttaacctgaacgataactgtt 14994092  T

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Target: scaffold0246 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 311 - 391
Target Start/End: Complemental strand, 9621 - 9541
Alignment:
Q  311 cttttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgtttc 391  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | | ||||||||||    
T  9621 cttttaatcaaaatcttatttttaaacggagagatctcttatatcttatttattaaagttaacccggatgctaactgtttc 9541  T

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Target: scaffold0246; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 313 - 388
Target Start/End: Complemental strand, 9775 - 9700
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttatttattaaagttaacccgtacgataactgt 388  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||    
T  9775 tttaatcaaaatctgattttcaaacggagagatcttttatctcttatttattaaagttaacccggacgttaactgt 9700  T

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Target: scaffold0891 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 2053 - 2007
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttat 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2053 tttaatcaaaatcttattttcaaacggagagatctcttatctcttat 2007  T

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Target: scaffold0891; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 1892 - 1843
Alignment:
Q  313 tttaatcaaaatcttattttcaaacggagagatctcttatctcttattta 362  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1892 tttaatcaaaatcttatttacaaacggagagatctcttatctcttattta 1843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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