View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19765_high_1 (Length: 793)
Name: NF19765_high_1
Description: NF19765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19765_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 569; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 18 - 663
Target Start/End: Complemental strand, 47894068 - 47893422
Alignment:
| Q |
18 |
gtatgagcaaagaaacaaactcgtctccggcaaagggttccgtcgttacaaagctgagttctgtaacgagaaggatgaagccagcattcaaaaacaccat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47894068 |
gtatgagcaaagaaacaaactcgtctccggcaaagggttccgtcgttacaaagctgagttctgtaacgagaaggatgaagccagcattcaaaaacaccat |
47893969 |
T |
|
| Q |
118 |
gagcgaagtggcaagaatcacctttggtgcagtttcctaatttgcgaaactcagggcaaggattgccggaataattgtatttttgagggtctctccggcg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47893968 |
gagcgaagtggcaagaatcacctttggtgcagtttcctaatttgcgaaactccgggcaaggattgccggaataattgtatttttgagggtctctccggcg |
47893869 |
T |
|
| Q |
218 |
agctttttcgccgggatgagagtatggacagtccgtccagtcatgggacctaccacgttggcattttcgaaccttgaattcgaacattcggaattggtca |
317 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47893868 |
agctttttcaccgggatgagagtatggacagtccgtccagtcatgggacctaccacgttggcattttcgaaccttgaattcgaacattcggaattggtca |
47893769 |
T |
|
| Q |
318 |
gttgagaaaacatggattggtaagtcgaaatcttcagtcatgcatgaagtggctatgtctatgtcgtttgaaatgaaatggttggagaatggtacttcct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47893768 |
gttgagaaaacatggattggtaagtcgaaatcttcagtcatgcatgaagtgtgtatgtctatgtcgtttgaaatgaaatggttggagaatgttacttcct |
47893669 |
T |
|
| Q |
418 |
cgtaatgtgttgtgttccactcagggattttaaggtttggaattttgatcatggtttcggatggattaaggaatggtgtatgagtgagtgagaggagtaa |
517 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47893668 |
cgtattgtgttgtgttccactcagggattttaaggtttggaattttgatcatggtttcggatggattaaggaatggtgtatgagtgactgagaggagtaa |
47893569 |
T |
|
| Q |
518 |
ttgattgcagtgtgactcgtgtagctagctagctatatatagaaagaaatgaatatca--atg---ctatgcatgtggtttgaaaaatttaactgtggtt |
612 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
47893568 |
ttgattgcagtgtgactcgtgtagcta----gctatatatagaaagaaatgaataatatcatgtgcctatgtatgtggtttgaaaaatttaactgtggtt |
47893473 |
T |
|
| Q |
613 |
tgagtaagtctacttggcttgctttataatggtaattattggcttctacct |
663 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47893472 |
tgagtaagtctacttggcttgctttataatggtaattattggcttctacct |
47893422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 662 - 782
Target Start/End: Complemental strand, 47893378 - 47893258
Alignment:
| Q |
662 |
ctaaaaatgcaaatgccaaacttatcaatatatatgcaaatcttgtaaacttctcctaaatatccaatttgtcgactttgttttgatggaattgataaac |
761 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47893378 |
ctaaaaatgcaaatgccaaacttatcaatatatatgcaaatcttgtaaacttctcctaaatatccaatttgtcgactttgttttgatggaattgataaac |
47893279 |
T |
|
| Q |
762 |
caccctccattttgtcttcat |
782 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47893278 |
caccctccattttgtcttcat |
47893258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 53 - 310
Target Start/End: Original strand, 42926175 - 42926429
Alignment:
| Q |
53 |
ggttccgtcgttacaaagctgagttctgtaacgagaaggatgaagccagcattcaaaaacaccatgagcgaagtggcaagaatcacctttggtgcagttt |
152 |
Q |
| |
|
||||||||| ||||| ||||||| | |||||| |||||||||||||| || || |||||||||||||| || | || ||||||||||| |||| || |
|
|
| T |
42926175 |
ggttccgtctttacacggctgagtacggtaacgcgaaggatgaagccaacactcgaaaacaccatgagcaaactcacacgaatcacctttcttgcaactt |
42926274 |
T |
|
| Q |
153 |
cctaatttgcgaaactcagggcaaggattgccggaataattgtatttttgagggtctctccggcgagctttttcgccgggatgagagtatggacagtccg |
252 |
Q |
| |
|
||| || ||||| ||||| || | | ||||||| || || || ||| ||||| | ||||||||||| |||||||||||||| | ||||| |||| |
|
|
| T |
42926275 |
cct---ttacgaaaatcaggacatgaagtgccggagtagttatactttctcgggtcacggcggcgagctttctcgccgggatgagaaaaaggacactccg |
42926371 |
T |
|
| Q |
253 |
tccagtcatgggacctaccacgttggcattttcgaaccttgaattcgaacattcggaa |
310 |
Q |
| |
|
|||||||||| ||||| |||||| |||| |||| |||||| |||||||| ||||| |
|
|
| T |
42926372 |
tccagtcatgagacctgccacgtgcgcatcgacgaatcttgaactcgaacatgcggaa |
42926429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 38748172 - 38748222
Alignment:
| Q |
74 |
agttctgtaacgagaaggatgaagccagcattcaaaaacaccatgagcgaa |
124 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38748172 |
agttctgtatctagcaggatgaagccagcattcaaaaacgccatgagcgaa |
38748222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 34340261 - 34340199
Alignment:
| Q |
213 |
cggcgagctttttcgccgggatgagagtatggacagtccgtccagtcatgggacctaccacgt |
275 |
Q |
| |
|
||||| ||||| ||||||||||| | ||||||||| |||||||||||||| || || |||||| |
|
|
| T |
34340261 |
cggcgtgctttctcgccgggatgtgcgtatggacactccgtccagtcatgtgatcttccacgt |
34340199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University