View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19765_high_2 (Length: 409)
Name: NF19765_high_2
Description: NF19765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19765_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 15908701 - 15909091
Alignment:
| Q |
1 |
tagcactgacacttcagatggaagacgtatatagtgactgacacgtattggtgtcggacaccaacatatgtacttatattccattcttttatttttctca |
100 |
Q |
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| T |
15908701 |
tagcactgacacttcagatggaagacgtatatagtgactgacacgtattggtgtcggacaccaacatatgtacttatattccatccttttatttt-ctca |
15908799 |
T |
|
| Q |
101 |
aattattaccggtgccgacatatcaata--agtatcgtgtctgatattcatgtctttgtgggtgctttgtctgactaacttaataacaattgtaaactgt |
198 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
15908800 |
aattattaccggtgccgacatatcaatatgagtatcgtgtctgatattcatg-----------gctttgaatgactaacttaataacaattgtaaactgt |
15908888 |
T |
|
| Q |
199 |
ttgttaactgatttaactaactaactaacaaatctaataatgtctgatacattacatttacttggtctaaaatttaaagtcttatgatctcctacacttc |
298 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15908889 |
ttcttaactgatttaactaactaactaacaaatctaataatgtctgttacattacatttactaggtctaaaatttaaagtcttatgatctcctacacttc |
15908988 |
T |
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| Q |
299 |
aatctgattgaagtcgtgtctggtgtttgagactgacatgacatcgacatatgttgctacattcaattgtcgaagtgtcaatgtctagttcagtgtctgt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15908989 |
aatctgattgaagtcgtgtctggtgtttgagactgacatgacatcgacatatgttgctacattcaattgtcgaagtgtcaatgtctagttcagtgtctgt |
15909088 |
T |
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