View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19765_high_5 (Length: 268)
Name: NF19765_high_5
Description: NF19765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19765_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 39587354 - 39587114
Alignment:
| Q |
16 |
ataactaatcatagaatcaaatcaacaatcaatcaaaatgacccagttcttctattacattctccttgctattatctcacttttaacactaaaatttgta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39587354 |
ataactaatcatagaatcaaatcaacaatcaatcaaaatgacccagttcttctatcacattctccttgctattatctcactcttaacactaaaatttgta |
39587255 |
T |
|
| Q |
116 |
ataatcacaacaagaaaactcaaaaaccttccaccaggtccatcaagtattccaattataggcaacattcatcaactcaaacacccacttcaccgtacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39587254 |
ataatcacaacaagaaaactcaaaaaccttccaccaggtccatcaagtattccaattataggcaacattcatcaactcaaacacccacttcaccgtacct |
39587155 |
T |
|
| Q |
216 |
tccacactctctcacaaaaatacggtcaagtcttttcccta |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39587154 |
tccacactctctcacaaaaatacggtcaagtcttttcccta |
39587114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 217
Target Start/End: Original strand, 14956254 - 14956353
Alignment:
| Q |
118 |
aatcacaacaagaaaactcaaaaaccttccaccaggtccatcaagtattccaattataggcaacattcatcaactcaaacacccacttcaccgtaccttc |
217 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||| ||| ||||| || || |||||| | || || || |||||||| || |||||||||||| |
|
|
| T |
14956254 |
aatcacatcaagaaggctaaaaaaccttccaccaggtccaccaacaattcctataattggcaacctccaccacctaaaacaccctctccaccgtaccttc |
14956353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 252
Target Start/End: Original strand, 5883880 - 5884006
Alignment:
| Q |
126 |
caagaaaactcaaaaaccttccaccaggtccatcaagtattccaattataggcaacattcatcaactcaaacacccacttcaccgtaccttccacactct |
225 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| | || |||| || || || ||| |||| ||||||||||| ||||| |||| || |||||||| | |
|
|
| T |
5883880 |
caagaaagttcaaaaaccttccaccaggcccacaatgtcttcctataattggaaaccttcaccaactcaaacaaccactccaccacacattccacacctt |
5883979 |
T |
|
| Q |
226 |
ctcacaaaaatacggtcaagtcttttc |
252 |
Q |
| |
|
||||||||||| || ||| ||||||| |
|
|
| T |
5883980 |
atcacaaaaatatggccaaatcttttc |
5884006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University