View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19765_low_3 (Length: 287)
Name: NF19765_low_3
Description: NF19765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19765_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 1207745 - 1207486
Alignment:
| Q |
11 |
atcatcaacgaaagtcgaaaataagactcttaaaagagcaaataaattagttatcaaaaacatcaagaagttacaataggatgaacaaatactagtaatt |
110 |
Q |
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| T |
1207745 |
atcatcaactaaagtcgaaaataagactcttaaaagagcaaataaattagttaacaaaaacatcaagaagttacaagaggatgaacaaatactagtaatt |
1207646 |
T |
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| Q |
111 |
acaaaccttaagaacgagtgtctcgagaacaggtgtcttttgaagcaaggctaagagaatttcgacactaactaagccaacctccaaatcggtcaacatt |
210 |
Q |
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| T |
1207645 |
acaaaccttaagaacgagtgtcttgagaacaggtgtcttttgaagtaatgctaagagaatttcgacactaactaagccaacctccaaatcggtcaacatt |
1207546 |
T |
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| Q |
211 |
ggaaatacgcacagctcttttggttgcatcagaacctgattggtattgcaacagaaggat |
270 |
Q |
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| T |
1207545 |
ggaaatacgcacagctcttttggttgcatcagaacctgattggtattgcaacagaaggat |
1207486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 581212 - 581076
Alignment:
| Q |
104 |
agtaattacaaaccttaagaacgagtgtctcgagaacaggtgtcttttgaagcaaggctaagagaatttcgacactaactaagccaacctccaaatcggt |
203 |
Q |
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| T |
581212 |
agtaattacgaaccttgagaacaagtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacgaagccaacctccaaatgggt |
581113 |
T |
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| Q |
204 |
caacattggaaatacgcacagctcttttggttgcatc |
240 |
Q |
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| T |
581112 |
caacattggaaatacacatagcttttttggtagcatc |
581076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 1214837 - 1214746
Alignment:
| Q |
127 |
agtgtctcgagaacaggtgtcttttgaagcaaggctaagagaatttcgacactaactaagccaacctccaaatcggtcaacattggaaatac |
218 |
Q |
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| T |
1214837 |
agtgtcttgagaaccggtgtcttttcaagcaaggctaacagaatatcaacactaagtaagccaacatccaaatgggccaacattggaaatac |
1214746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 1201479 - 1201357
Alignment:
| Q |
96 |
caaatactagtaattacaaaccttaagaacgagtgtctcgagaacaggtgtcttttgaagcaaggctaagagaatttcgacactaactaagccaacctcc |
195 |
Q |
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| T |
1201479 |
caaatactagtaattacgaaccttgagaactagtgtcttgagaaccggtgtcttttgtagtaagaccaagagattatcaacactaatcaagccaacctcc |
1201380 |
T |
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| Q |
196 |
aaatcggtcaacattggaaatac |
218 |
Q |
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| T |
1201379 |
aaatgtgtcaacgttgaaaatac |
1201357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 97 - 248
Target Start/End: Original strand, 8188721 - 8188872
Alignment:
| Q |
97 |
aaatactagtaattacaaaccttaagaacgagtgtctcgagaacaggtgtcttttgaagcaaggctaagagaatttcgacactaactaagccaacctcca |
196 |
Q |
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|||||||||||||||| |||||||||||| ||||||| |||||| || |||||||||||||||||||| ||||| | ||||||||||| |||||||||| |
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| T |
8188721 |
aaatactagtaattaccaaccttaagaactagtgtcttgagaaccggcgtcttttgaagcaaggctaacagaatattaacactaactaaaccaacctcca |
8188820 |
T |
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| Q |
197 |
aatcggtcaacattggaaatacgcacagctcttttggttgcatcagaacctg |
248 |
Q |
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| T |
8188821 |
aatcggtcaacattggaaatacacatagcttctgtggttgcctcagaacctg |
8188872 |
T |
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