View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19766_high_11 (Length: 269)
Name: NF19766_high_11
Description: NF19766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19766_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 34353330 - 34353089
Alignment:
| Q |
20 |
atgtgatctgagaattctcaacaagcaacaatggtttcttcctccttagtcaagtctttgtcttgtgcttttcgtgcctgccgtatcaaccactctttca |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34353330 |
atgtgatctgagaattctcaacaagcgacaatggtttcttcctccttagtgaagtctttgtcttgtgcttttcgtgcctgccgtatcagccactctttca |
34353231 |
T |
|
| Q |
120 |
gctccaccaggatcttttcgtcttccattgtctctgtcgaatcccaaactagcaatgatgatctcaatattgccgatgatattacacaggtcggtttcac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34353230 |
gctccaccaggatcttttcgtcttccattgtctctgtcgaatcccaaactagcaacgatgatctcaatattgccgatgatattacacaggtcggtttcac |
34353131 |
T |
|
| Q |
220 |
actatttttgttttgt-----tttgcttattttgtctgtgct |
256 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34353130 |
actatttttgttttgttttgttttgcttattttgtctgtgct |
34353089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 34358955 - 34358735
Alignment:
| Q |
20 |
atgtgatctgagaattctcaacaagcaacaatggtttcttcctccttagtcaagtctttgtcttgtgcttttcgtgcctgccgtatcaaccactctttca |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||||| ||||| ||||| |
|
|
| T |
34358955 |
atgtgatctgagaattctcaacaaacaacaatggcttcttcctccttagtcaagtctttgacttgtgctttgcgtgctggccgtatcagccactgtttca |
34358856 |
T |
|
| Q |
120 |
gctccaccaggatcttttcgtcttccattgtctctgtcgaatcccaaactagcaatgatgatctcaatattgccgatgatattacacaggtcggtttc-- |
217 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34358855 |
gctccaccaggatcttttcgtcttccactgtttatgtcgaatcccaaactagcaacgatgttctcaatattgccgatgatattacacaggtcggtttcac |
34358756 |
T |
|
| Q |
218 |
acactatttttgttttgtttt |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34358755 |
acactatttttgttttgtttt |
34358735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University