View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19766_high_9 (Length: 290)

Name: NF19766_high_9
Description: NF19766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19766_high_9
NF19766_high_9
[»] chr5 (15 HSPs)
chr5 (171-221)||(20643916-20643966)
chr5 (171-221)||(9957625-9957675)
chr5 (171-221)||(32110904-32110954)
chr5 (167-221)||(7071136-7071190)
chr5 (171-221)||(8225365-8225415)
chr5 (171-221)||(8959561-8959611)
chr5 (171-213)||(34425232-34425274)
chr5 (171-221)||(39505441-39505491)
chr5 (171-221)||(42273551-42273601)
chr5 (171-221)||(12730196-12730246)
chr5 (179-221)||(19413050-19413092)
chr5 (171-215)||(842750-842794)
chr5 (171-215)||(11262068-11262112)
chr5 (183-215)||(37522774-37522806)
chr5 (183-215)||(37562946-37562978)
[»] chr4 (16 HSPs)
chr4 (167-221)||(4058610-4058664)
chr4 (171-215)||(7654558-7654602)
chr4 (171-221)||(17186984-17187034)
chr4 (183-221)||(29203419-29203457)
chr4 (171-215)||(2229178-2229222)
chr4 (171-215)||(14332690-14332734)
chr4 (171-221)||(16605037-16605087)
chr4 (171-221)||(35310945-35310995)
chr4 (171-221)||(35529571-35529621)
chr4 (171-221)||(39078057-39078107)
chr4 (171-221)||(42915429-42915479)
chr4 (167-205)||(50080678-50080716)
chr4 (171-215)||(28669177-28669221)
chr4 (171-215)||(41414786-41414830)
chr4 (171-215)||(47867810-47867854)
chr4 (171-211)||(55580567-55580607)
[»] chr8 (12 HSPs)
chr8 (171-221)||(34890384-34890434)
chr8 (171-221)||(30576037-30576087)
chr8 (171-221)||(35456234-35456284)
chr8 (171-221)||(41755824-41755874)
chr8 (171-215)||(7022588-7022632)
chr8 (171-215)||(7858459-7858503)
chr8 (171-221)||(8107828-8107879)
chr8 (171-221)||(4047104-4047154)
chr8 (183-221)||(13144171-13144209)
chr8 (183-221)||(24892750-24892788)
chr8 (171-221)||(35525498-35525548)
chr8 (171-221)||(36190671-36190721)
[»] chr7 (16 HSPs)
chr7 (171-221)||(25944478-25944528)
chr7 (12-61)||(21517075-21517124)
chr7 (171-215)||(18102462-18102506)
chr7 (171-215)||(45485886-45485930)
chr7 (171-221)||(9157992-9158042)
chr7 (179-221)||(42045032-42045074)
chr7 (171-221)||(47778674-47778724)
chr7 (171-212)||(47557933-47557974)
chr7 (171-215)||(14805803-14805847)
chr7 (171-215)||(15252797-15252841)
chr7 (171-215)||(16562681-16562725)
chr7 (171-215)||(16602937-16602981)
chr7 (171-219)||(18800912-18800960)
chr7 (171-215)||(19912952-19912996)
chr7 (65-93)||(21516930-21516958)
chr7 (171-219)||(30082281-30082329)
[»] chr3 (14 HSPs)
chr3 (171-221)||(14752376-14752426)
chr3 (171-221)||(54465059-54465109)
chr3 (132-221)||(2927155-2927244)
chr3 (171-215)||(11054451-11054495)
chr3 (171-221)||(6752573-6752623)
chr3 (171-221)||(7866651-7866701)
chr3 (171-221)||(22456157-22456207)
chr3 (171-221)||(22479203-22479253)
chr3 (171-221)||(37074864-37074914)
chr3 (167-221)||(47867083-47867137)
chr3 (171-215)||(23311736-23311780)
chr3 (183-215)||(23910638-23910670)
chr3 (171-215)||(36546479-36546523)
chr3 (171-215)||(36561792-36561836)
[»] chr2 (20 HSPs)
chr2 (171-221)||(19264001-19264051)
chr2 (171-221)||(5280689-5280739)
chr2 (171-221)||(18454967-18455017)
chr2 (171-221)||(28858211-28858261)
chr2 (171-221)||(33198843-33198893)
chr2 (171-215)||(3201268-3201312)
chr2 (171-215)||(6110384-6110428)
chr2 (171-221)||(8701503-8701553)
chr2 (171-221)||(11616925-11616975)
chr2 (171-221)||(26998238-26998288)
chr2 (167-221)||(30752043-30752097)
chr2 (171-221)||(32273592-32273642)
chr2 (167-205)||(35022794-35022832)
chr2 (171-221)||(38070917-38070967)
chr2 (171-221)||(40808921-40808971)
chr2 (171-221)||(45660264-45660314)
chr2 (171-215)||(28599332-28599376)
chr2 (183-215)||(35517067-35517099)
chr2 (183-215)||(41528201-41528233)
chr2 (171-215)||(45085190-45085234)
[»] chr1 (22 HSPs)
chr1 (171-221)||(1820317-1820367)
chr1 (171-221)||(6787200-6787250)
chr1 (171-221)||(15959849-15959899)
chr1 (171-221)||(2125970-2126020)
chr1 (171-221)||(7468162-7468212)
chr1 (171-221)||(28016953-28017003)
chr1 (171-215)||(12449151-12449195)
chr1 (171-215)||(32624190-32624234)
chr1 (171-215)||(39555770-39555814)
chr1 (183-221)||(298876-298914)
chr1 (171-221)||(4672801-4672851)
chr1 (171-213)||(6786739-6786781)
chr1 (183-221)||(32983348-32983386)
chr1 (171-221)||(33369455-33369505)
chr1 (171-221)||(44149041-44149091)
chr1 (171-221)||(46818720-46818770)
chr1 (171-221)||(47026396-47026446)
chr1 (185-221)||(3875232-3875268)
chr1 (179-215)||(28120938-28120974)
chr1 (172-212)||(35884141-35884181)
chr1 (183-215)||(43667484-43667516)
chr1 (171-203)||(50369870-50369902)
[»] scaffold0132 (2 HSPs)
scaffold0132 (171-221)||(914-964)
scaffold0132 (171-221)||(8874-8924)
[»] scaffold0006 (1 HSPs)
scaffold0006 (12-61)||(127851-127900)
[»] scaffold0045 (1 HSPs)
scaffold0045 (171-215)||(77890-77934)
[»] chr6 (6 HSPs)
chr6 (171-215)||(3095905-3095949)
chr6 (171-215)||(21542351-21542395)
chr6 (171-221)||(3888346-3888396)
chr6 (167-205)||(12461607-12461645)
chr6 (171-219)||(32882873-32882921)
chr6 (171-215)||(35129239-35129283)
[»] scaffold0330 (1 HSPs)
scaffold0330 (171-221)||(3089-3139)
[»] scaffold0009 (1 HSPs)
scaffold0009 (171-221)||(157696-157746)


Alignment Details
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 20643916 - 20643966
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  20643916 tttctttatcccaaaatataagcaaaaaagacaaacttttatcttatttaa 20643966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 9957675 - 9957625
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  9957675 tttctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaa 9957625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 32110904 - 32110954
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  32110904 tttctttatcctaaaatataagcaaaaaagacaaacatttatcctatttaa 32110954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 7071136 - 7071190
Alignment:
Q  167 tcactttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||| | | ||||||||||| ||||||||||| |||||||||||||||    
T  7071136 tcactttctttgtaccaaaatataagcgaaaaagacaaacttttatcttatttaa 7071190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 8225365 - 8225415
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| |||||||    
T  8225365 tttctttgtcccaaaatataagcaaaaaagacaaacttttatcatatttaa 8225415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 8959561 - 8959611
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||||||| |||||||||||||||| || ||||||| |||||||    
T  8959561 tttctttatcctaaattataagcaaaaaagaccaacttttatcatatttaa 8959611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 34425232 - 34425274
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatc 213  Q
    ||||||| ||||||||||||||||||||||||||| |||||||    
T  34425232 tttctttgtcctaaaatataagcaaaaaagacaaacttttatc 34425274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 39505491 - 39505441
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| |||||| ||||||||    
T  39505491 tttctttgtcccaaaatataagcaaaaaagacaaacttttattttatttaa 39505441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 42273551 - 42273601
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| |||||||    
T  42273551 tttctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaa 42273601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 12730246 - 12730196
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| |||||||||| |||||||||||| ||||||| |||||||    
T  12730246 tttctttgtcccaaaatataagtaaaaaagacaaacttttatcctatttaa 12730196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 19413050 - 19413092
Alignment:
Q  179 tcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||    
T  19413050 tcctaaaatataagcaaaaaagataaacttttattttatttaa 19413092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 842794 - 842750
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||| ||| |||||||||    
T  842794 tttctttgtcccaaaatataagcaaaaaagataaacttttatctt 842750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 11262112 - 11262068
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| |||||||||| |||||||||||| |||||||||    
T  11262112 tttctttgtcccaaaatataagtaaaaaagacaaacttttatctt 11262068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 37522806 - 37522774
Alignment:
Q  183 aaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||||||||||||||||||| |||||||||    
T  37522806 aaaatataagcaaaaaagacaaacttttatctt 37522774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 37562978 - 37562946
Alignment:
Q  183 aaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||||||||||||||||||| |||||||||    
T  37562978 aaaatataagcaaaaaagacaaacttttatctt 37562946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 4058610 - 4058664
Alignment:
Q  167 tcactttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||    
T  4058610 tcactttctttgtcctaaaatataagcaaaaaagacaaacttttatcctatttaa 4058664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 7654558 - 7654602
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  7654558 tttctttatcctaaaatataagcaaaaaagacaaacttttatctt 7654602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 17187034 - 17186984
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| |||||||    
T  17187034 tttctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaa 17186984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 29203419 - 29203457
Alignment:
Q  183 aaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  29203419 aaaatataagcaaaaaagacaaacttttatcttatttaa 29203457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 2229178 - 2229222
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  2229178 tttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 2229222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 14332690 - 14332734
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  14332690 tttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 14332734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 16605087 - 16605037
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||  |||||||    
T  16605087 tttctttgtcccaaaatataagcaaaaaagacaaacttttatgctatttaa 16605037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 35310995 - 35310945
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| || |||||||||||||||||||||||| ||||||  |||||||    
T  35310995 tttctttgtcttaaaatataagcaaaaaagacaaacttttattatatttaa 35310945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 35529571 - 35529621
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||  |||||||    
T  35529571 tttctttgtcccaaaatataagcaaaaaagacaaacttttattctatttaa 35529621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 39078057 - 39078107
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| |||||||||| |||||||||||| ||||||| |||||||    
T  39078057 tttctttgtcccaaaatataagtaaaaaagacaaacttttatcctatttaa 39078107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 42915429 - 42915479
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||  |||||||    
T  42915429 tttctttgtcccaaaatataagcaaaaaagacaaacttttattatatttaa 42915479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 50080716 - 50080678
Alignment:
Q  167 tcactttctttatcctaaaatataagcaaaaaagacaaa 205  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  50080716 tcactttctttatcccaaaatgtaagcaaaaaagacaaa 50080678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 28669221 - 28669177
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| |||||||||||||||| |||||| |||||||||    
T  28669221 tttctttgtcccaaaatataagcaaaaaggacaaatttttatctt 28669177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 41414830 - 41414786
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| |||||||||| |||||||||||| |||||||||    
T  41414830 tttctttgtcccaaaatataagtaaaaaagacaaacttttatctt 41414786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 47867810 - 47867854
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||| ||| |||||||||    
T  47867810 tttctttgtcccaaaatataagcaaaaaagaaaaacttttatctt 47867854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 55580567 - 55580607
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagtttta 211  Q
    ||||||| ||| ||||||||||||||||||||||| |||||    
T  55580567 tttctttgtcccaaaatataagcaaaaaagacaaactttta 55580607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 34890434 - 34890384
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  34890434 tttctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaa 34890384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 30576087 - 30576037
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| |||||||    
T  30576087 tttctttgtcccaaaatataagcaaaaaagacaaatttttatcctatttaa 30576037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 35456284 - 35456234
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    |||||||||||||||||||||| |||||| | ||| |||||||||||||||    
T  35456284 tttctttatcctaaaatataagtaaaaaaaataaatttttatcttatttaa 35456234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 41755824 - 41755874
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||||||||||| |||||||||| |||| ||||||| |||||||    
T  41755824 tttctttatcctaaaatatgagcaaaaaaggcaaatttttatcctatttaa 41755874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 7022632 - 7022588
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  7022632 tttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 7022588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 7858459 - 7858503
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  7858459 tttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 7858503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 8107879 - 8107828
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaa-gacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||| |||||| |||||||||||||||    
T  8107879 tttctttgtcccaaaatataagcaaaaaaagacaaatttttatcttatttaa 8107828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 4047154 - 4047104
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||  |||||||    
T  4047154 tttctttgtcccaaaatataagcaaaaaagacaaacttttattctatttaa 4047104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 13144209 - 13144171
Alignment:
Q  183 aaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  13144209 aaaatataagcaaaaaagacaaacttttatcctatttaa 13144171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 24892750 - 24892788
Alignment:
Q  183 aaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  24892750 aaaatataagcaaaaaagacaaacttttatcctatttaa 24892788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 35525498 - 35525548
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| |||||||||| |||||||||||| ||||||| |||||||    
T  35525498 tttctttgtcccaaaatataagtaaaaaagacaaacttttatcctatttaa 35525548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 36190671 - 36190721
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||| | ||||||| |||||||    
T  36190671 tttctttgtcccaaaatataagcaaaaaagacacacttttatcctatttaa 36190721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 25944478 - 25944528
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  25944478 tttctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaa 25944528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 21517124 - 21517075
Alignment:
Q  12 aaaggcacaatcatcaacattcgatttttaacgaaacaattacactggtt 61  Q
    ||||||||||||||||||| ||| |||||||| |||||||||| ||||||    
T  21517124 aaaggcacaatcatcaacactcggtttttaacaaaacaattactctggtt 21517075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 18102462 - 18102506
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  18102462 tttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 18102506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 45485886 - 45485930
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  45485886 tttctttgtccaaaaatataagcaaaaaagacaaaattttatctt 45485930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 9157992 - 9158042
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||  |||||||    
T  9157992 tttctttatcccaaaatataatcaaaaaagacaaacttttattctatttaa 9158042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 42045074 - 42045032
Alignment:
Q  179 tcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    |||||||||||||  |||||||||||| |||||||||||||||    
T  42045074 tcctaaaatataaataaaaaagacaaatttttatcttatttaa 42045032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 47778674 - 47778724
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||  |||||||    
T  47778674 tttctttgtcccaaaatataagcaaaaaagacaaatttttattctatttaa 47778724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 47557974 - 47557933
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttat 212  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||    
T  47557974 tttctttgtcccaaaatataagcaaaaaagacaaacttttat 47557933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 14805803 - 14805847
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||| ||||||| |||||||||    
T  14805803 tttctttgtcccaaaatataagcaaaacagacaaacttttatctt 14805847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 15252797 - 15252841
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||| ||||||| |||||||||    
T  15252797 tttctttgtcccaaaatataagcaaaacagacaaacttttatctt 15252841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 16562681 - 16562725
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| |||||||||| |||||||||||| |||||||||    
T  16562681 tttctttgtcccaaaatataagtaaaaaagacaaatttttatctt 16562725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 16602981 - 16602937
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| |||||||||| |||||||||||| |||||||||    
T  16602981 tttctttgtcccaaaatataagtaaaaaagacaaatttttatctt 16602937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 18800960 - 18800912
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttattt 219  Q
    ||||||| ||| ||||||||||||||||||||| | |||||| ||||||    
T  18800960 tttctttgtcccaaaatataagcaaaaaagacatacttttatgttattt 18800912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 19912996 - 19912952
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||||||| |||||||||  |||||||||||| |||||||||    
T  19912996 tttctttatcccaaaatataaataaaaaagacaaacttttatctt 19912952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 21516958 - 21516930
Alignment:
Q  65 atatgctaaaatatcatgtttgaaaacaa 93  Q
    |||||||||||||||||||||||||||||    
T  21516958 atatgctaaaatatcatgtttgaaaacaa 21516930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 30082281 - 30082329
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttattt 219  Q
    ||||||| ||| |||||||||||||||||||| || |||||| ||||||    
T  30082281 tttctttgtcccaaaatataagcaaaaaagaccaatttttatgttattt 30082329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 14752426 - 14752376
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  14752426 tttctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaa 14752376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 54465109 - 54465059
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  54465109 tttctttgtcctaaaatataagcaaaaaagataaatttttatcttatttaa 54465059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 2927155 - 2927244
Alignment:
Q  132 tactccctccgttctaaaatataagtacnnnnnnntcactttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    |||||||||||| || |||||||||||        ||| ||||||| || |||||||||||||||||||||||| ||||||  |||||||    
T  2927155 tactccctccgtcctgaaatataagtaaaaaaaactcattttctttgtcttaaaatataagcaaaaaagacaaacttttattatatttaa 2927244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 11054495 - 11054451
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  11054495 tttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 11054451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 6752573 - 6752623
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||||||||| |||| |||||||||||| ||||||| |||||||    
T  6752573 tttctttgtcctaaaatttaagtaaaaaagacaaacttttatcctatttaa 6752623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 7866701 - 7866651
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||| ||||||||||||| ||||||| |||||||    
T  7866701 tttctttgtcccaaaatataaacaaaaaagacaaacttttatcctatttaa 7866651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 22456207 - 22456157
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||| ||| |||||||||||||||| || ||||||| |||||||    
T  22456207 tttctttatcccaaattataagcaaaaaagaccaacttttatcatatttaa 22456157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 22479253 - 22479203
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||| ||||||||||||||||||| ||||||| |||||||    
T  22479253 tttctttgtcccaaattataagcaaaaaagacaaacttttatcatatttaa 22479203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 37074864 - 37074914
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| |||  |||||||||||||||||||||| ||||||| |||||||    
T  37074864 tttctttgtcccgaaatataagcaaaaaagacaaacttttatcctatttaa 37074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 47867137 - 47867083
Alignment:
Q  167 tcactttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    |||| |||||||||| ||||| |||| |||||||||||| ||||||| |||||||    
T  47867137 tcaccttctttatcccaaaatgtaagtaaaaaagacaaatttttatcctatttaa 47867083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 23311780 - 23311736
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| |||||||||||||||||| |||| |||||||||    
T  23311780 tttctttgtcccaaaatataagcaaaaaagtcaaacttttatctt 23311736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 23910670 - 23910638
Alignment:
Q  183 aaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||||||||||||||||||| |||||||||    
T  23910670 aaaatataagcaaaaaagacaaatttttatctt 23910638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 36546479 - 36546523
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||| ||||    
T  36546479 tttctttgtcccaaaatataagcaaaaaagacaaacttttgtctt 36546523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 36561836 - 36561792
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||| ||||    
T  36561836 tttctttgtcccaaaatataagcaaaaaagacaaacttttgtctt 36561792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 19264001 - 19264051
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  19264001 tttctttgtcccaaaatataagcaaaaaagacaaacttttatcttatttaa 19264051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 5280739 - 5280689
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| |||||||    
T  5280739 tttctttgtcccaaaatataagcaaaaaagacaaatttttatcctatttaa 5280689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 18454967 - 18455017
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||||||||||||||||||||||| ||| |||||| ||||||||    
T  18454967 tttctttgtcctaaaatataagcaaaaaagataaatttttattttatttaa 18455017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 28858211 - 28858261
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||| |||||||    
T  28858211 tttctttgtcctaaaatataagcaaaaaatacaaacttttatcctatttaa 28858261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 33198893 - 33198843
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| |||||||    
T  33198893 tttctttgtcccaaaatataagcaaaaaagacaaaattttatcctatttaa 33198843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 3201268 - 3201312
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||||||| ||||||||||||||||||||||| | |||||||    
T  3201268 tttctttatcccaaaatataagcaaaaaagacaaactattatctt 3201312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 6110428 - 6110384
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  6110428 tttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 6110384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 8701503 - 8701553
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    |||||||||| |||||||||| ||||||||||||| ||||||  |||||||    
T  8701503 tttctttatcttaaaatataaacaaaaaagacaaacttttattatatttaa 8701553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 11616925 - 11616975
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| |||||||||||||| |||||||| ||| ||||||| |||||||    
T  11616925 tttctttgtcctaaaatataagtaaaaaagataaacttttatcctatttaa 11616975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 26998238 - 26998288
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||||||| |||||||||||||||| || ||||||| |||||||    
T  26998238 tttctttgtcctaaattataagcaaaaaagaccaacttttatcatatttaa 26998288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 30752043 - 30752097
Alignment:
Q  167 tcactttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||||||| ||| ||||||||||| ||||||  ||||||| |||||||    
T  30752043 tcactttctttatcccaaattataagcaaaatagacaagtttttatcctatttaa 30752097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 32273592 - 32273642
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||||||| |||||||||||||||| || ||||||| |||||||    
T  32273592 tttctttgtcctaaattataagcaaaaaagaccaacttttatcatatttaa 32273642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 35022794 - 35022832
Alignment:
Q  167 tcactttctttatcctaaaatataagcaaaaaagacaaa 205  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  35022794 tcactttctttgtcctaaaatgtaagcaaaaaagacaaa 35022832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 38070917 - 38070967
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||| ||||||||||||||||||| ||||||| |||||||    
T  38070917 tttctttgtcccaaattataagcaaaaaagacaaacttttatcatatttaa 38070967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 40808971 - 40808921
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||  |||||||    
T  40808971 tttctttgtcccaaaatataagcaaaaaagacaaatttttattctatttaa 40808921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 45660264 - 45660314
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||| ||||| ||||||| |||||||    
T  45660264 tttctttgtcccaaaatataagcaaaaaaaacaaacttttatcctatttaa 45660314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 28599376 - 28599332
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||| ||||||||||||| |||||||||    
T  28599376 tttctttgtcccaaaatataatcaaaaaagacaaacttttatctt 28599332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 35517067 - 35517099
Alignment:
Q  183 aaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||||||||||||||||||| |||||||||    
T  35517067 aaaatataagcaaaaaagacaaacttttatctt 35517099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 41528201 - 41528233
Alignment:
Q  183 aaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||||||||||||||||||| |||||||||    
T  41528201 aaaatataagcaaaaaagacaaacttttatctt 41528233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 45085190 - 45085234
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||| ||| |||||||||    
T  45085190 tttctttgtcccaaaatataagcaaaaaagataaacttttatctt 45085234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 1820317 - 1820367
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    |||||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  1820317 tttctttatcctaaaatataagtaaaaaagacaaacttttatcctatttaa 1820367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 6787250 - 6787200
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  6787250 tttctttatcccaaaatataagcaaaaaagacaaacttttatcctatttaa 6787200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 15959899 - 15959849
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  15959899 tttctttgtcccaaaatataagcaaaaaagacaaatttttatcttatttaa 15959849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 2125970 - 2126020
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||| |||||    
T  2125970 tttctttgtcctaaaatataagtaaaaaagacaaacttttatcttttttaa 2126020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 7468212 - 7468162
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| |||||||    
T  7468212 tttctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaa 7468162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 28017003 - 28016953
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| |||||||    
T  28017003 tttctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaa 28016953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 12449195 - 12449151
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  12449195 tttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 12449151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 32624234 - 32624190
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  32624234 tttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 32624190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 39555814 - 39555770
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  39555814 tttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 39555770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 298914 - 298876
Alignment:
Q  183 aaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  298914 aaaatgtaagcaaaaaagacaaagttttatcctatttaa 298876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 4672801 - 4672851
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||| ||| ||||||| |||||||    
T  4672801 tttctttgtcccaaaatataagcaaaaaagataaatttttatcctatttaa 4672851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 6786739 - 6786781
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatc 213  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||    
T  6786739 tttctttgtcccaaaatataagcaaaaaagacaaacttttatc 6786781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 32983386 - 32983348
Alignment:
Q  183 aaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  32983386 aaaatataagcaaaaaagacaaatttttatcttttttaa 32983348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 33369455 - 33369505
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||||| ||||||||||||||||||||  ||||||| |||||||    
T  33369455 tttctttgtcctagaatataagcaaaaaagacaagcttttatcctatttaa 33369505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 44149091 - 44149041
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||  |||||||    
T  44149091 tttctttgtcccaaaatataagcaaaaaagacaaacttttattctatttaa 44149041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 46818770 - 46818720
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||||||||| |||| |||||||||||| ||| ||| |||||||    
T  46818770 tttctttatcctaaaatgtaagtaaaaaagacaaactttaatcatatttaa 46818720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 47026396 - 47026446
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| | |||||||||||| |||||||||||| ||||||| |||||||    
T  47026396 tttctttgttctaaaatataagtaaaaaagacaaacttttatcctatttaa 47026446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 3875268 - 3875232
Alignment:
Q  185 aatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  3875268 aatataagcaaaaaagacaaatttttatcctatttaa 3875232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 28120974 - 28120938
Alignment:
Q  179 tcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    |||||||||||||| |||||||||||| |||||||||    
T  28120974 tcctaaaatataagtaaaaaagacaaacttttatctt 28120938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 35884141 - 35884181
Alignment:
Q  172 ttctttatcctaaaatataagcaaaaaagacaaagttttat 212  Q
    ||||||||| ||||||||||||||||||||| || ||||||    
T  35884141 ttctttatcttaaaatataagcaaaaaagaccaacttttat 35884181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 43667516 - 43667484
Alignment:
Q  183 aaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||||||||||||||||||| |||||||||    
T  43667516 aaaatataagcaaaaaagacaaacttttatctt 43667484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 50369870 - 50369902
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagaca 203  Q
    ||||||| |||||||||||||||||||||||||    
T  50369870 tttctttgtcctaaaatataagcaaaaaagaca 50369902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 914 - 964
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| |||||||    
T  914 tttctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaa 964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 8874 - 8924
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| |||||||    
T  8874 tttctttgtcccaaaatataagcaaaaaagacaaacttttatcctatttaa 8924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 127900 - 127851
Alignment:
Q  12 aaaggcacaatcatcaacattcgatttttaacgaaacaattacactggtt 61  Q
    ||||||||||||||||||| |||||||||||| ||| | |||||||||||    
T  127900 aaaggcacaatcatcaacactcgatttttaacaaaatagttacactggtt 127851  T

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Target: scaffold0045 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 77890 - 77934
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  77890 tttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 77934  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 3095949 - 3095905
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  3095949 tttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 3095905  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 21542351 - 21542395
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  21542351 tttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 21542395  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 3888346 - 3888396
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||| ||||| |||||||||||||||| || ||||||| |||||||    
T  3888346 tttctttattctaaattataagcaaaaaagaccaacttttatcatatttaa 3888396  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 12461645 - 12461607
Alignment:
Q  167 tcactttctttatcctaaaatataagcaaaaaagacaaa 205  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  12461645 tcactttctttatccaaaaatgtaagcaaaaaagacaaa 12461607  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 32882921 - 32882873
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttattt 219  Q
    ||||||| |||||||||||||||||||||||| || |||| | ||||||    
T  32882921 tttctttgtcctaaaatataagcaaaaaagaccaacttttgtgttattt 32882873  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 35129283 - 35129239
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatctt 215  Q
    ||||||| ||| |||||| |||||||||||||||| |||||||||    
T  35129283 tttctttgtcccaaaatacaagcaaaaaagacaaacttttatctt 35129239  T

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Target: scaffold0330 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 3089 - 3139
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||||||||||| |||||||||||||||  || ||||||| |||||||    
T  3089 tttctttatcctaaattataagcaaaaaagatcaacttttatcatatttaa 3139  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 157696 - 157746
Alignment:
Q  171 tttctttatcctaaaatataagcaaaaaagacaaagttttatcttatttaa 221  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||  |||||||    
T  157696 tttctttgtcccaaaatataagcaaaaaagacaaacttttattctatttaa 157746  T

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