View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19766_low_1 (Length: 760)
Name: NF19766_low_1
Description: NF19766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19766_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 627; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 15 - 745
Target Start/End: Original strand, 10416559 - 10417289
Alignment:
| Q |
15 |
gaggtttagcttggtgtcacatgagtcaccttgtgaactacttccatctccttgtgaagaagaacttccattcacttgtgaacttccaaggtttgctgaa |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10416559 |
gaggtttagcttggtgtcacatgagtcaccttgtgaactacttccatctccttgtgaagaagaacttccattcacttgtgaacttccaaggtttgctgaa |
10416658 |
T |
|
| Q |
115 |
gcaacaaaacaaattgtgaaaatgagggatgctaagtatgccttcatttctgtatttcaattaattatgtttgtgtgtttataaacgtattagtaagatt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10416659 |
gcaacaaaacaaattgtgaaaatgagggatgctaagtatgccttcatttctgtatttcaattaattatgtttgtgtgtttataaacgtattagtaagatt |
10416758 |
T |
|
| Q |
215 |
tgtgttatgagacatattgtaatttaattgataatgnnnnnnnnnnnngttgttacaaagaaaaggtaaaggaattattattacaaattaaacaatggta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10416759 |
tgtgttatgagacatattgtaatttaattgataaagaaaaagaaaaaagttgttacaaagaaaaggtaaaggaattattattacaaattaaacaatggta |
10416858 |
T |
|
| Q |
315 |
tttggttgcaaaggcagaagcagtttatcaataattatgatgacctttatttgattaagtagatttggtagaaggctaacttaaaccattaattagtcaa |
414 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10416859 |
tttggttgcaaaggaagaagcagtttatcaataattatgatgacctttatttgattaagtagatttggtagaaggctaacttaaaccattaattagtcaa |
10416958 |
T |
|
| Q |
415 |
cctttcattcnnnnnnnnnnnnggtgtaaagtcaaacctctaatccatttttattttgaatggaacctttcaatcatgaggtaagattaagagggtaaaa |
514 |
Q |
| |
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|||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10416959 |
cctttcattcttttttatttttggtgtaaagtcaaacttctaatacatttttattttgaatggaacctttcattcatgaggtaagattaagagggtaaaa |
10417058 |
T |
|
| Q |
515 |
attatcataaaattatgatagttcaaactttacatgcattattagagtagtattaattatgcttctgtccctcgagctatttttaggtgcattcaaactc |
614 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
10417059 |
attatcataaaattatgatagttcaaactttacatgcattattagagtagtattaattatgcctctgtccctcgagctatttttaggtgcattcagactc |
10417158 |
T |
|
| Q |
615 |
tgcatttgagcttatatactggtttaagtacttgcaaaactgtttttagcttatggaaacaacttataacatgttaacaaactgttttcagcttatttta |
714 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10417159 |
tgcatttgagcttatatactggtttaagtacttgcaaaactgtttttagcttatggaaacaacttataacatgttaacaaactgttttcagcttatttta |
10417258 |
T |
|
| Q |
715 |
taagctataaataatagtagtttatcaaaat |
745 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |
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|
| T |
10417259 |
taagctatacataatagtagtttatcaaaat |
10417289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 710
Target Start/End: Original strand, 2487991 - 2488037
Alignment:
| Q |
664 |
cttatggaaacaacttataacatgttaacaaactgttttcagcttat |
710 |
Q |
| |
|
|||||| ||||||||||||||||||| | |||||||||| ||||||| |
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|
| T |
2487991 |
cttatgaaaacaacttataacatgttcaaaaactgtttttagcttat |
2488037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 712
Target Start/End: Original strand, 30191122 - 30191172
Alignment:
| Q |
662 |
agcttatggaaacaacttataacatgttaacaaactgttttcagcttattt |
712 |
Q |
| |
|
|||||||||||||||||||| ||||||| | || |||||||||||||||| |
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| T |
30191122 |
agcttatggaaacaacttatgacatgttcaaaacttgttttcagcttattt |
30191172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 713
Target Start/End: Original strand, 25670569 - 25670618
Alignment:
| Q |
664 |
cttatggaaacaacttataacatgttaacaaactgttttcagcttatttt |
713 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||| ||||||||||||||||| |
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| T |
25670569 |
cttatgaaaacaacttatgacatgttaataaattgttttcagcttatttt |
25670618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 683
Target Start/End: Complemental strand, 18765354 - 18765323
Alignment:
| Q |
652 |
aactgtttttagcttatggaaacaacttataa |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
18765354 |
aactgtttttagcttatggaaacaacttataa |
18765323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 718
Target Start/End: Complemental strand, 19719093 - 19719038
Alignment:
| Q |
664 |
cttatggaaacaacttataacatgttaacaaactgttttcagcttat-tttataag |
718 |
Q |
| |
|
|||||| ||||||||||| ||||||| | |||||||||||||||||| |||||||| |
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| T |
19719093 |
cttatgaaaacaacttatgacatgttcataaactgttttcagcttatctttataag |
19719038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 663 - 713
Target Start/End: Complemental strand, 12110448 - 12110398
Alignment:
| Q |
663 |
gcttatggaaacaacttataacatgttaacaaactgttttcagcttatttt |
713 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||||||| || ||||||| |
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| T |
12110448 |
gcttatgaaaacaacttatgacatgttcacaaactgtttttagattatttt |
12110398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 712
Target Start/End: Original strand, 36598337 - 36598387
Alignment:
| Q |
662 |
agcttatggaaacaacttataacatgttaacaaactgttttcagcttattt |
712 |
Q |
| |
|
|||||||||||||| ||||| ||||||| | || ||||||||||||||||| |
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|
| T |
36598337 |
agcttatggaaacatcttatgacatgttcataagctgttttcagcttattt |
36598387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 720
Target Start/End: Complemental strand, 2023660 - 2023601
Alignment:
| Q |
662 |
agcttatggaaacaacttataacatgttaacaaactgttttcagcttattt-tataagct |
720 |
Q |
| |
|
||||| |||||||||||||| || || | |||||||||||||||||||||| |||||||| |
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|
| T |
2023660 |
agcttgtggaaacaacttatgacctgatcacaaactgttttcagcttatttctataagct |
2023601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 713
Target Start/End: Original strand, 8364959 - 8365008
Alignment:
| Q |
664 |
cttatggaaacaacttataacatgttaacaaactgttttcagcttatttt |
713 |
Q |
| |
|
|||||||||| |||| || ||||||| |||| |||||||||||||||||| |
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|
| T |
8364959 |
cttatggaaataactgatgacatgtttacaagctgttttcagcttatttt |
8365008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 713
Target Start/End: Complemental strand, 7674735 - 7674686
Alignment:
| Q |
664 |
cttatggaaacaacttataacatgttaacaaactgttttcagcttatttt |
713 |
Q |
| |
|
|||||||||||||||||| ||||||| | || ||||||||||||||||| |
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|
| T |
7674735 |
cttatggaaacaacttatgacatgtttataaggtgttttcagcttatttt |
7674686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 712
Target Start/End: Complemental strand, 43205397 - 43205348
Alignment:
| Q |
663 |
gcttatggaaacaacttataacatgttaacaaactgttttcagcttattt |
712 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||| ||||||| |
|
|
| T |
43205397 |
gcttatggaaacaacatataacatgtccgcaaactgttttcaacttattt |
43205348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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