View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19766_low_10 (Length: 300)
Name: NF19766_low_10
Description: NF19766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19766_low_10 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 40313111 - 40312798
Alignment:
| Q |
1 |
ctccgtgccaaataccacttcatgttcataatcaagaaattgataccaattccattttctacgtttattcaaacgaatgaccaaattttgttttcgtttt |
100 |
Q |
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| T |
40313111 |
ctccgtgccaaataccgcttcatgttcataatcaagaaattgataccaattccattttctacatttattcaaacgaatgaccaaattttgttttcgtttt |
40313012 |
T |
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| Q |
101 |
aatggatcaaattatcttgcaaagagcagatcaatgcaacaaatgttaggagc--------------attcattgagggaaccactcctgtttatgatct |
186 |
Q |
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| T |
40313011 |
aatggatcaaattatcttgcaaggagcagatcaatgcaacaaatgttaggagctaagacaagcttgcattcattgagggaaccactcctgtttatgatct |
40312912 |
T |
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| Q |
187 |
atttgatttgaattgaggtgcatgagaacgatgtaatcatcttattcattcatggttcatcaattttgtttctgaatctatagcacaaaccataggtttc |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40312911 |
atttgatttgaattgaggtgcatgagaacgatgtaatcatcttattcattcatggttcatcaattttgtttctgaatctatagcacaaaccataggtttc |
40312812 |
T |
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| Q |
287 |
catgaaaatgttgt |
300 |
Q |
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| T |
40312811 |
catgaaaatgttgt |
40312798 |
T |
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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 1812 - 1748
Alignment:
| Q |
191 |
gatttgaattgaggtgcatgagaacgatgtaatcatcttattcattcatggttcatcaattttgt |
255 |
Q |
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| T |
1812 |
gatttgaatcgtgatgcatgggaacgatgcaatcaccttattcactcgtggttgatcaattttgt |
1748 |
T |
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