View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19766_low_13 (Length: 282)

Name: NF19766_low_13
Description: NF19766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19766_low_13
NF19766_low_13
[»] chr3 (2 HSPs)
chr3 (12-267)||(55087994-55088249)
chr3 (92-210)||(55084808-55084926)
[»] chr4 (14 HSPs)
chr4 (42-244)||(27600525-27600727)
chr4 (111-199)||(27423263-27423351)
chr4 (155-210)||(27495621-27495676)
chr4 (123-210)||(27524577-27524664)
chr4 (66-210)||(27424514-27424655)
chr4 (117-205)||(27490007-27490095)
chr4 (72-210)||(27557494-27557629)
chr4 (99-210)||(27503951-27504062)
chr4 (123-209)||(27508905-27508991)
chr4 (156-210)||(27577404-27577458)
chr4 (178-210)||(27466929-27466961)
chr4 (178-214)||(27487091-27487127)
chr4 (178-210)||(27513776-27513808)
chr4 (163-211)||(27595478-27595526)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 55088249 - 55087994
Alignment:
Q  12 tcatcacatcatctccatagtagaaatcattccaatgttccaaagggccatgtagcagtctatgttggagaggctcaaaagaagcgttttgtggttccaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55088249 tcatcacatcatctccatagtagaaatcattccaatgttccaaagggccatgtagcagtctatgttggagaggctcaaaagaagcgttttgtggttccaa 55088150  T
Q  112 tatcttacttaaaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgcaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55088149 tatcttacttaaaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgcaa 55088050  T
Q  212 agaggaggcttttattaatcttacctctcaactgcacgcctgcctctcttgaatac 267  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55088049 agaagaggcttttattaatcttacctctcaactgcacgcctgcctctcttgaatac 55087994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 55084808 - 55084926
Alignment:
Q  92 gaagcgttttgtggttccaatatcttacttaaaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggt 191  Q
    |||||| |||||| | || || |||||||| ||||| || |||||||  || ||||| | ||| || |||||||| ||||| | | ||||||||||||||    
T  55084808 gaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaagaatttggatacgatcatccaatgggt 55084907  T
Q  192 ggtctcactattccatgca 210  Q
    || ||||| ||||| ||||    
T  55084908 ggcctcacaattccttgca 55084926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 27600525 - 27600727
Alignment:
Q  42 tccaatgttccaaagggccatgtagcagtctatgttggagaggctcaaaagaagcgttttgtggttccaatatcttacttaaaccacccttcatttcttg 141  Q
    ||||||||||||||||| ||  |||||||||| ||||| |||   |||||||| || ||||||||||||||||| ||||| || || ||| | |||||||    
T  27600525 tccaatgttccaaagggacacatagcagtctacgttggtgagttgcaaaagaaacggtttgtggttccaatatcatacttgaatcatcctacctttcttg 27600624  T
Q  142 atttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgcaaagaggaggcttttattaatcttacctctca 241  Q
    | ||| | |   | |  || ||||| ||||||| |||||||||||||||||||||||| ||||| |||||||| || || || || ||||||||||||||    
T  27600625 acttgcttagcagtgtggaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatgcattcatcaatcttacctctca 27600724  T
Q  242 act 244  Q
    |||    
T  27600725 act 27600727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 27423263 - 27423351
Alignment:
Q  111 atatcttacttaaaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcac 199  Q
    ||||| ||||| ||||| ||||||||||  || ||||| | || ||| |||||||||||||||| ||||||||| |||||||| |||||    
T  27423263 atatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcac 27423351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 27495621 - 27495676
Alignment:
Q  155 agctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgca 210  Q
    |||||| ||||||||||| || ||||||||||||||||||||||| ||||| ||||    
T  27495621 agctgaagaagagtttggatttaatcatccaatgggtggtctcaccattccttgca 27495676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 27524577 - 27524664
Alignment:
Q  123 aaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgca 210  Q
    ||||| ||||||||||  || ||||| |||| |||||||||||||||||| |   |||||||||||||||| ||||| ||||| ||||    
T  27524577 aaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccgtgca 27524664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 210
Target Start/End: Complemental strand, 27424655 - 27424514
Alignment:
Q  66 gcagtctatgttggagaggctcaaaagaagcgttttgtggttccaatatcttacttaaaccacccttcatttcttgatttgttaaatcgagctgaggaag 165  Q
    |||||||||||||||||   ||||| || ||| |||||| ||||| |||| ||||| ||||| ||||||||||  || ||| |||||| | |||| ||||    
T  27424655 gcagtctatgttggaga---tcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaag 27424559  T
Q  166 agtttggtttcaatcatccaatgggtggtctcactattccatgca 210  Q
    | | ||| |   ||||||||||||||||||| || ||||| ||||    
T  27424558 aatatggatatgatcatccaatgggtggtcttaccattccgtgca 27424514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 27490007 - 27490095
Alignment:
Q  117 tacttaaaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcactattcc 205  Q
    ||||||||| | || |||||||  |||||||| |||| ||| |||||||||||||| |   |||||||||||||||| ||||| |||||    
T  27490007 tacttaaacaaaccatcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcc 27490095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 27557494 - 27557629
Alignment:
Q  72 tatgttggagaggctcaaaagaagcgttttgtggttccaatatcttacttaaaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttg 171  Q
    |||||||||||||   ||| |||| | |||||| | ||||| || ||||||||||| || |||||||  || ||| | |||| |||||||||| | ||||    
T  27557494 tatgttggagagg---aaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttg 27557590  T
Q  172 gtttcaatcatccaatgggtggtctcactattccatgca 210  Q
      |    ||||||||||||||||||||||||||||||||    
T  27557591 aatatgttcatccaatgggtggtctcactattccatgca 27557629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 27503951 - 27504062
Alignment:
Q  99 tttgtggttccaatatcttacttaaaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctca 198  Q
    ||||| |||||  |||| ||||| ||||| ||||||||||  || ||||| | || ||| |||||||||||||| |   |||||||||||||||| ||||    
T  27503951 tttgtagttcctgtatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctca 27504050  T
Q  199 ctattccatgca 210  Q
    | ||||| ||||    
T  27504051 ccattccttgca 27504062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 27508905 - 27508991
Alignment:
Q  123 aaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgc 209  Q
    ||||| ||||||||||  || ||||| ||||  ||||||||||||||||| |   ||||||||| |||||| ||||| |||||||||    
T  27508905 aaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattccatgc 27508991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 27577404 - 27577458
Alignment:
Q  156 gctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgca 210  Q
    ||||| ||||| ||||| |||||||| || |||||||||||||| ||||||||||    
T  27577404 gctgaagaagaatttggattcaatcaccctatgggtggtctcacaattccatgca 27577458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 27466929 - 27466961
Alignment:
Q  178 atcatccaatgggtggtctcactattccatgca 210  Q
    |||||||||||||||||||||||||||| ||||    
T  27466929 atcatccaatgggtggtctcactattccttgca 27466961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 27487091 - 27487127
Alignment:
Q  178 atcatccaatgggtggtctcactattccatgcaaaga 214  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  27487091 atcatccaatgggtggtcttactattccttgcaaaga 27487127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 27513808 - 27513776
Alignment:
Q  178 atcatccaatgggtggtctcactattccatgca 210  Q
    |||||||||||||||||||||||||||| ||||    
T  27513808 atcatccaatgggtggtctcactattccttgca 27513776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 27595478 - 27595526
Alignment:
Q  163 aagagtttggtttcaatcatccaatgggtggtctcactattccatgcaa 211  Q
    |||||||||| ||||||||||| ||||||||||| || ||||| |||||    
T  27595478 aagagtttggattcaatcatcccatgggtggtcttacaattccttgcaa 27595526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University