View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19766_low_16 (Length: 264)
Name: NF19766_low_16
Description: NF19766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19766_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 43995047 - 43995254
Alignment:
| Q |
12 |
gagcagagaaatgaaaaagaagaagagttgatacctggtcaagaagccattaatggaagtgaaagtgttgttgtagtattaaagaaggagagatctgagt |
111 |
Q |
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| T |
43995047 |
gagcaaagaaatgaaaaagaagaagagttgatacctggtcaagaagccattaatggaagtgaaagtgttgttgtagtattaaagaaggagagatctgagt |
43995146 |
T |
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| Q |
112 |
gtgacgtgtgtacgttttcttcttcactgcgttttgttttgttttcttctgtatatcttaacagagagagaaagagctaacactaaacagtactagtaga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
43995147 |
gtgacgtgtgtacgttttcttcttcactgcgttttgttttatt-----ctgtatatctgaacagagagagaaagatctaacactaaacagtactagtaga |
43995241 |
T |
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| Q |
212 |
gagatagatagcg |
224 |
Q |
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||||||||||||| |
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| T |
43995242 |
gagatagatagcg |
43995254 |
T |
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