View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19766_low_17 (Length: 259)
Name: NF19766_low_17
Description: NF19766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19766_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8074741 - 8074981
Alignment:
| Q |
1 |
taacgtaggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaaagaagttaagccctcaaaaactgatttgcaatca |
100 |
Q |
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| T |
8074741 |
taacgtaggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaacgaagttaagccctcaaaaactgatttgcaatca |
8074840 |
T |
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| Q |
101 |
ctcattgcaaacctcaccatattagaatcactttccatagcatcattgaatagcttggaatgagtcggattttgtagaattaaatcccataatggagtct |
200 |
Q |
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| T |
8074841 |
ctcattgcaaacctcaccatattagaatcactttccatagcatcattgaataacttggaatgagtcggattttgtaaaattaaatcccataatggagtct |
8074940 |
T |
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| Q |
201 |
caaagattgtgaggtcctccattgatgtccatgtgctcaat |
241 |
Q |
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| T |
8074941 |
caaagattgtgaggtcctccattgatgtccatgtgctcaat |
8074981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8066306 - 8066546
Alignment:
| Q |
1 |
taacgtaggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaaagaagttaagccctcaaaaactgatttgcaatca |
100 |
Q |
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| T |
8066306 |
taacgtaggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttatgccctcaaaaactgatttgcaatca |
8066405 |
T |
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| Q |
101 |
ctcattgcaaacctcaccatattagaatcactttccatagcatcattgaatagcttggaatgagtcggattttgtagaattaaatcccataatggagtct |
200 |
Q |
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| T |
8066406 |
ctcattgcaaacctcatcatattagagtcactctccatagcatcattgaataactccgcgtaagccgaattttgttgcatgaaatcccataatgtagtat |
8066505 |
T |
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| Q |
201 |
caaagattgtgaggtcctccattgatgtccatgtgctcaat |
241 |
Q |
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| T |
8066506 |
cgaagattgtgagatcctccttagatgtccatttggtcaat |
8066546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 34951317 - 34951456
Alignment:
| Q |
8 |
ggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaaagaagttaagccctcaaaaactgatttgcaatcactcattg |
107 |
Q |
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| T |
34951317 |
ggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaacatcaaccaatgaaccaatcccttcaaaaacagaattacaatctctcaaag |
34951416 |
T |
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| Q |
108 |
caaacctcaccatattagaatcactttccatagcatcatt |
147 |
Q |
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| T |
34951417 |
ccaacctcacaacatgagaatcactttccatagcatcatt |
34951456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 34946846 - 34946985
Alignment:
| Q |
8 |
ggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaaagaagttaagccctcaaaaactgatttgcaatcactcattg |
107 |
Q |
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|||||||||||||| ||||| ||| | |||||||| |||||||| |||||||||||||| ||| | || | |||||| || || ||||| |||| | |
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| T |
34946846 |
ggaaacgcctcacatataatcttagctgtgtttccagttccaccaccaacatcaaccaatgaaccaatcccttgaaaaacagacttacaatctctcaagg |
34946945 |
T |
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| Q |
108 |
caaacctcaccatattagaatcactttccatagcatcatt |
147 |
Q |
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| T |
34946946 |
ccaacctcacaacatgagaatcactttccatagcatcatt |
34946985 |
T |
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