View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19766_low_20 (Length: 235)
Name: NF19766_low_20
Description: NF19766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19766_low_20 |
 | |
|
| [»] scaffold1295 (1 HSPs) |
| | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 29458150 - 29457931
Alignment:
| Q |
1 |
tttcaatgtataatgatgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
29458150 |
tttcaatgtacaatgatgatacaaaattgaagagtatcatccaagagttgattgaagaaagtgataatgatgatccaatgccaaaacaatatcaccgaaa |
29458051 |
T |
|
| Q |
101 |
tttatacacagaagtttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatca |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| |
|
|
| T |
29458050 |
tttatacacagaaggttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaattatttatcgtgaaattgatatca |
29457951 |
T |
|
| Q |
201 |
atagaaggcatggtggaaac |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
29457950 |
atagaaggcatggtggaaac |
29457931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 43567471 - 43567336
Alignment:
| Q |
1 |
tttcaatgtataatgatgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43567471 |
tttcaatgtacaatgatgatacaaaattgaagagtatcatccaagaattgattgaagaaagtgataatgatgatccaatgccaaaacaataccaccgaaa |
43567372 |
T |
|
| Q |
101 |
tttatacacagaagtttaggacaatagcccttaatt |
136 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| |
|
|
| T |
43567371 |
tttatacacagaaggttagtacaatagcccttaatt |
43567336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 7571322 - 7571524
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| || || || |||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||| ||| |
|
|
| T |
7571322 |
atgatacaaaattgaagaatatcatccaaaagttggttgaagaaagtgataatggtgatccaaaaccaaaacaataccatcgaaatttatacacaaaagg |
7571421 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtg |
215 |
Q |
| |
|
|| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
7571422 |
atatgaccatagcccctaattaaaattataaccaaccaattttcaacaaaagtgtaaagaag--tttgttgtgaaattgatattaatagaaggcatggtg |
7571519 |
T |
|
| Q |
216 |
gaaac |
220 |
Q |
| |
|
||||| |
|
|
| T |
7571520 |
gaaac |
7571524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 16665917 - 16666119
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| || || || |||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||| ||| |
|
|
| T |
16665917 |
atgatacaaaattgaagaatatcatccaaaagttggttgaagaaagtgataatggtgatccaaaaccaaaacaataccatcgaaatttatacacaaaagg |
16666016 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtg |
215 |
Q |
| |
|
|| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
16666017 |
atatgaccatagcccctaattaaaattataaccaaccaattttcaacaaaagtgtaaagaag--tttgttgtgaaattgatattaatagaaggcatggtg |
16666114 |
T |
|
| Q |
216 |
gaaac |
220 |
Q |
| |
|
||||| |
|
|
| T |
16666115 |
gaaac |
16666119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 43566797 - 43566700
Alignment:
| Q |
123 |
aatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtggaaac |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43566797 |
aatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgtgaaattgatatcaatagaaggcatggtggaaac |
43566700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 916307 - 916523
Alignment:
| Q |
1 |
tttcaatgtataatgatgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaa |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
916307 |
tttcaatatataatgatgatacaaaattgaagagtatcatccaagagttgattgaagaaagtgataatgatc---caaagccaaaacaataccaccgaaa |
916403 |
T |
|
| Q |
101 |
tttatacacagaagtttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatca |
200 |
Q |
| |
|
||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
916404 |
tttgtacacaaaaggttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgtgaaattgatatca |
916503 |
T |
|
| Q |
201 |
atagaaggcatggtggaaac |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
916504 |
atagaaggcatggtggaaac |
916523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 12278393 - 12278177
Alignment:
| Q |
1 |
tttcaatgtataatgatgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaa |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||| |||||| |||| |
|
|
| T |
12278393 |
tttcaatatataatgatgatacaaaattgaagagtatcatccaagagttgattgaagaaagtgataatgatgatccaaagccaaaa---taccactgaaa |
12278297 |
T |
|
| Q |
101 |
tttatacacagaagtttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatca |
200 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
12278296 |
tttatacacagaagattaggacaataacccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaaatatttattgtgaaattgatatca |
12278197 |
T |
|
| Q |
201 |
atagaaggcatggtggaaac |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
12278196 |
atagaaggcatggtggaaac |
12278177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 28845849 - 28845645
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| || || || |||||||||||||||||| |||| || |||||||||||||||| ||||||||||||||||| |
|
|
| T |
28845849 |
atgatacaaaattgaagaatatcatccaaaagttggttgaagaaagtgataatggtgatctaaaaccaaaacaataccaccaaaatttatacacagaagg |
28845750 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtg |
215 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
28845749 |
atatgacaatagcccctaattaaaattataaccaaccaattttcaacaaaagtgtaaagaagtatttgttgtgaaattgatatcaatagaaggcatggtg |
28845650 |
T |
|
| Q |
216 |
gaaac |
220 |
Q |
| |
|
||||| |
|
|
| T |
28845649 |
gaaac |
28845645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 10189065 - 10189019
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagt |
62 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
10189065 |
atgatacaaaattgaagagtatcatccaagagttgattgaagaaagt |
10189019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 4140987 - 4140945
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaaga |
58 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
4140987 |
atgatacaaaattgaagagtatcatccaagagttgattgaaga |
4140945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 37297441 - 37297638
Alignment:
| Q |
20 |
tacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagtttag |
119 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
37297441 |
tacaaaattgaagagtatcatccaagagttgattgaagaaagtgataatgatgatccaaaaccaaaacaataccaccgaaatttatacacagaaggataa |
37297540 |
T |
|
| Q |
120 |
gacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtggaaa |
219 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
37297541 |
gacaatagcccctaattaaaattataaccaaccaattttcaacaaaagtgt---aaagtatttgttgtgaaattgatatcaatagaaggcatggtagaaa |
37297637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 37010092 - 37009956
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
|||||||||||||||||| ||| ||| || || || |||||||||||||||||| |||| ||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
37010092 |
atgatacaaaattgaagaatataatccaaaagttggttgaagaaagtgataatggtgatccaaaaccaaaacaataccaccaaaatttatacacagaagg |
37009993 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaacc |
152 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
37009992 |
atatgacaatagcccctaattaaaattataaccaacc |
37009956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 36993930 - 36993858
Alignment:
| Q |
148 |
caaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtggaaac |
220 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| ||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
36993930 |
caaccaattttcaacaaaagtgtaaagaagtatttgttgtgaaattgatatccatagaaggcatgatggaaac |
36993858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 48269098 - 48268896
Alignment:
| Q |
18 |
gatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagttt |
117 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| || |||||||||||||||||| |||| ||| |||||||||||||||| ||||||||||||||||| | |
|
|
| T |
48269098 |
gatacaaaattgaagaatatcatccaagagttggttgaagaaagtgataatggtgatccaaaaccaaaacaataccaccaaaatttatacacagaaggat |
48268999 |
T |
|
| Q |
118 |
aggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtgga |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||||||||||||||||||||||||| || |
|
|
| T |
48268998 |
aggacaatagcccctaattaaaattataaccaaccaattttcaacaaaagtgtaaagaagtatttgttgtgaaattgatatcaatagaaggcatggtaga |
48268899 |
T |
|
| Q |
218 |
aac |
220 |
Q |
| |
|
||| |
|
|
| T |
48268898 |
aac |
48268896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 35873182 - 35872978
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| || |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
35873182 |
atgatacaaaattgaagaatatcatccaagagttggttgaagaaagtgataatggtgatccaaaaccaaaacaataccaccgaaatttatacccagaagg |
35873083 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtg |
215 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
35873082 |
atatgacaatagcttctaattaaaattataaccaaccaattttcaacaaaagtgtaaagaagtatttgttgtgaaattgatatcaatagaaggcatggtg |
35872983 |
T |
|
| Q |
216 |
gaaac |
220 |
Q |
| |
|
||||| |
|
|
| T |
35872982 |
gaaac |
35872978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 52352637 - 52352435
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| || || || |||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||| ||| |
|
|
| T |
52352637 |
atgatacaaaattgaagaatatcatccaaaagttggttgaagaaagtgataatggtgatccaaaaccaaaacaataccatcgaaatttatacacaaaagg |
52352538 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtg |
215 |
Q |
| |
|
|| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
52352537 |
atatgaccatagcccctaattaaaattataaccaaccaattttcaacaaaagtgtaaagaag--tttgttgtgaaattgatattaatagaaggcatggtg |
52352440 |
T |
|
| Q |
216 |
gaaac |
220 |
Q |
| |
|
||||| |
|
|
| T |
52352439 |
gaaac |
52352435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 46095321 - 46095117
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| || || || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46095321 |
atgatacaaaattgaagaatatcatccaaaagttggttgaagaaagtgataatggtgatccaaaaccaaaacaataccaccgaaatttatacacagaagg |
46095222 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtg |
215 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||||||||||||||||||||||| || |
|
|
| T |
46095221 |
atatgacaatagcccctaattaaaattataaccaaccaattttcaacaaaagtgtaaagaagtatttgttgtgaaattgatatcaatagaaggcatgatg |
46095122 |
T |
|
| Q |
216 |
gaaac |
220 |
Q |
| |
|
||||| |
|
|
| T |
46095121 |
gaaac |
46095117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 53827634 - 53827832
Alignment:
| Q |
22 |
caaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagtttagga |
121 |
Q |
| |
|
|||||||||||| ||||||| ||||| || ||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| |||||| | | | |
|
|
| T |
53827634 |
caaaattgaagaatatcatccaagagttggttgaagaaagtgataatgatgatccaaaaccaaaacaataccactgaaatttatacccagaaggatggaa |
53827733 |
T |
|
| Q |
122 |
caatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtggaaac |
220 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||| | |||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
53827734 |
caatagcccctaattaaaattataaccaagcaattttcaacaaaagtgtaaagaagtatttgttgtgaaattgatatcaatagaaggcatggtggaaac |
53827832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 2502233 - 2502435
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| || || || |||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||| ||| |
|
|
| T |
2502233 |
atgatacaaaattgaagaatatcatccaaaagttggttgaagaaagtgataatggtgatccaaaaccaaaacaataccatcgaaatttatacacaaaagg |
2502332 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtg |
215 |
Q |
| |
|
|| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
2502333 |
atatgaccatagcccctaattaaaattataaccaaccaattttcaacaaaagtgtaaagaag--tttgttgtgaaattgatattaatagaaggcatggtg |
2502430 |
T |
|
| Q |
216 |
gaaac |
220 |
Q |
| |
|
||||| |
|
|
| T |
2502431 |
gaaac |
2502435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 117 - 220
Target Start/End: Complemental strand, 20040000 - 20039897
Alignment:
| Q |
117 |
taggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtgg |
216 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||| |
|
|
| T |
20040000 |
taggacaatatcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttgttgtgaaattgacatcaatagaagacatggtgg |
20039901 |
T |
|
| Q |
217 |
aaac |
220 |
Q |
| |
|
|||| |
|
|
| T |
20039900 |
aaac |
20039897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 50077483 - 50077402
Alignment:
| Q |
121 |
acaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaat |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
50077483 |
acaatagcccttaattagaattataaccaactaattttcaacagcagtgtagaaaagtatttgttgagaaattgatatcaat |
50077402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 50077573 - 50077515
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgat |
74 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
50077573 |
atgatacaaaattaaagagtatcatccaagagttgattgaagaaagtaataatgatgat |
50077515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 21630242 - 21630284
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaaga |
58 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
21630242 |
atgatacaaaactgaagagtatcatccaagagttgattgaaga |
21630284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 34968962 - 34969051
Alignment:
| Q |
136 |
taaaattataaccaaccaattt-----tcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtggaaac |
220 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| | | | ||| |||||||||||| |||||| ||||||| |||| |
|
|
| T |
34968962 |
taaaattataaccaaccaattaatttatcaacaaaagtgtagaaaaatttcttttgtgaaattgatatcagtagaagacatggtgaaaac |
34969051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 9934542 - 9934739
Alignment:
| Q |
23 |
aaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagtttaggac |
122 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| ||| |||||| |
|
|
| T |
9934542 |
aaaattgaagagtatcatccaagagttgattgaagaaagtgataatgatgatccaaaaccaaaataataccaccgaaatttatacacataaggataggac |
9934641 |
T |
|
| Q |
123 |
aatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtggaaac |
220 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
9934642 |
aatagcccttaattaaaattataatcatacaattttcaacaaaagtgtagaaaattatttgttgtgaaattgatatcggtagaaggcatggtggaaac |
9934739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 47231133 - 47231349
Alignment:
| Q |
1 |
tttcaatgtataatgatgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaa |
100 |
Q |
| |
|
||||||| |||||||||| |||||||||||| ||||||| ||||| || ||||||||||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
47231133 |
tttcaatatataatgatg---caaaattgaagaatatcatccaagagttggttgaagaaagtgataatgatgatccaaaatcaaaacaatacaaccgaaa |
47231229 |
T |
|
| Q |
101 |
tttatacacagaagtttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatca |
200 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||| |||||||||||| |
|
|
| T |
47231230 |
tttatacacaaaaggataggacaatagcccctaattaaaattataaccaaccaattttcatcaaaagtgtaaagaagtatttgttgtgaaattgatatca |
47231329 |
T |
|
| Q |
201 |
atagaaggcatggtggaaac |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
47231330 |
atagaaggcatggtggaaac |
47231349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 39064352 - 39064556
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| || || || |||||||||||||||||| |||| ||| |||||| |||| |||||||||||||||||||||| |
|
|
| T |
39064352 |
atgatacaaaattgaagaatatcatccaaaagttggttgaagaaagtgataatggtgatccaaaaccaaaataatatcaccgaaatttatacacagaagg |
39064451 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtg |
215 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
39064452 |
atatgacaatagcccctaattaaaattataaccaaccaattttcaacaaaagtgtaaagaagtatttgttgtgaaattgatatcaatagaaggcatggtg |
39064551 |
T |
|
| Q |
216 |
gaaac |
220 |
Q |
| |
|
||||| |
|
|
| T |
39064552 |
gaaac |
39064556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 25416806 - 25417008
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| || || || |||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||| ||| |
|
|
| T |
25416806 |
atgatacaaaattgaagaatatcatccaaaagttggttgaagaaagtgataatggtgatccaaaaccaaaacaataccatcgaaatttatacacaaaagg |
25416905 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtg |
215 |
Q |
| |
|
|| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
25416906 |
atatgaccatagcccctaattaaaattataaccaaccaattttcaacaaaagtgtaaagaag--tttgttgtgaaattgatattaatagaaggcatggtg |
25417003 |
T |
|
| Q |
216 |
gaaac |
220 |
Q |
| |
|
||||| |
|
|
| T |
25417004 |
gaaac |
25417008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 5434206 - 5434019
Alignment:
| Q |
18 |
gatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagttt |
117 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||||||||| |||||||||||||||| ||| ||||| |||| |||||||||||||||| |
|
|
| T |
5434206 |
gatacaaaattgaagagtattatccaagagttgattgaagtaagtgataatgatgatccaaaagcaaaataataacaccgaaatttataca--------- |
5434116 |
T |
|
| Q |
118 |
aggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtgga |
217 |
Q |
| |
|
||| || |||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
5434115 |
------ataacctttaattaatattataaccaacccattttcaacaaaagtgtagaaaaatatttgttgttaaattgatatcaatagaaggcatggtgga |
5434022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 5765748 - 5765820
Alignment:
| Q |
148 |
caaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtggaaac |
220 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| ||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
5765748 |
caaccaattttcaacaaaagtgtaaagaagtatttgttgtgaaattgatatccatagaaggcatgatggaaac |
5765820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 13430684 - 13430886
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| || || || |||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||| ||| |
|
|
| T |
13430684 |
atgatacaaaattgaagaatatcatccaaaagttggttgaagaaagtgataatggtgatccaaaaccaaaacaataccatcgaaatttatacacaaaagg |
13430783 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtg |
215 |
Q |
| |
|
|| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
13430784 |
atatgaccatagcccctaattaaaattataaccaaccaattttcaacaaaagtgtaaagaag--tttgttgtgaaattgatattaatagaaggcatggtg |
13430881 |
T |
|
| Q |
216 |
gaaac |
220 |
Q |
| |
|
||||| |
|
|
| T |
13430882 |
gaaac |
13430886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 18885273 - 18885094
Alignment:
| Q |
18 |
gatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagttt |
117 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||| ||| ||||| |||||| |||||||||||| ||||||| | |
|
|
| T |
18885273 |
gatacaaaattgaagagtattatccaagagttgattgaagaaagtgataataatgatccaaaatcaaaataataccgccgaaatttatatacagaaggat |
18885174 |
T |
|
| Q |
118 |
aggacaatagcccttaattaaaattataaccaaccaattttcaac-aaaagtgtagaaaagtatttattgcaaaattgat |
196 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| |
|
|
| T |
18885173 |
gggacaatgacccttaattaaaattataaccaaccaattttcaacaaaaagtgtagaaaagtatttgttgtgaaattgat |
18885094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 10791936 - 10791855
Alignment:
| Q |
121 |
acaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaat |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
10791936 |
acaatagcccttaattagaattataaccaactaattttcaacagcagtgtagaaaagtatttgttgagaaattgatatcaat |
10791855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 10792026 - 10791968
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgat |
74 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
10792026 |
atgatacaaaattaaagagtatcatccaagagttgattgaagaaagttataatgatgat |
10791968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 13789140 - 13788938
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| || || || |||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||| ||| |
|
|
| T |
13789140 |
atgatacaaaattgaagaatatcatccaaaagttggttgaagaaagtgataatggtgatccaaaaccaaaacaataccatcgaaatttatacacaaaagg |
13789041 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtg |
215 |
Q |
| |
|
|| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
13789040 |
atatgaccatagcccctaattaaaattataaccaaccaattttcaacaaaagtgtaaagaag--tttgttgtgaaattgatattaatagaaggcatggtg |
13788943 |
T |
|
| Q |
216 |
gaaac |
220 |
Q |
| |
|
||||| |
|
|
| T |
13788942 |
gaaac |
13788938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 25805002 - 25805204
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| || || || |||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||| ||| |
|
|
| T |
25805002 |
atgatacaaaattgaagaatatcatccaaaagttggttgaagaaagtgataatggtgatccaaaaccaaaacaataccatcgaaatttatacacaaaagg |
25805101 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtg |
215 |
Q |
| |
|
|| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
25805102 |
atatgaccatagcccctaattaaaattataaccaaccaattttcaacaaaagtgtaaagaag--tttgttgtgaaattgatattaatagaaggcatggtg |
25805199 |
T |
|
| Q |
216 |
gaaac |
220 |
Q |
| |
|
||||| |
|
|
| T |
25805200 |
gaaac |
25805204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 39626173 - 39625994
Alignment:
| Q |
18 |
gatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagttt |
117 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||| ||||| |||||| | |||||||||| ||||||| | |
|
|
| T |
39626173 |
gatacaaaattgaagagtattatccaagagttgattgaagaaagtgataatgatgatccaaaatcaaaataataccgcagaaatttatatacagaaggat |
39626074 |
T |
|
| Q |
118 |
aggacaatagcccttaattaaaattataaccaaccaattttcaac-aaaagtgtagaaaagtatttattgcaaaattgat |
196 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| ||||||||| |
|
|
| T |
39626073 |
gggacaatgacccttaattaaaattataaccaaccaattttcaacaaaaagtgtagaaaagtatctgttgtaaaattgat |
39625994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 22909842 - 22909973
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||| |
|
|
| T |
22909842 |
atgatacaaaattgaagagtatcattcaagagttgattgaagaaagtgataatgatgatccaaaaccaaaacaacaccaccgaaatttatacatagaagg |
22909941 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataac |
147 |
Q |
| |
|
|| | ||||||||||||||||||||||||| |
|
|
| T |
22909942 |
ctaatagaatagcccttaattaaaattataac |
22909973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 22910080 - 22910163
Alignment:
| Q |
137 |
aaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtggaaac |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
22910080 |
aaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttgttgtgaaattgatatcaatagaaggcatggtgaaaac |
22910163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1295 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold1295
Description:
Target: scaffold1295; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 1514 - 1703
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| ||| | |||| |||| | | ||||||||||| |
|
|
| T |
1514 |
atgatacaaaattaaagagtatcatccaagagttgattgaagaaagtgataatgatgatccaaaactaaaataataatatcaaaatttataca------- |
1606 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
1607 |
--------atagcccttaattaaaattataaccaactaattttcaacaaaagtgtagaaaagtattggttctgaaattgatatcaatggaaggcatggtg |
1698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 14450 - 14262
Alignment:
| Q |
16 |
atgatacaaaattgaagagtatcatcgaagagctgattgaagaaagtgataatgatgattcaatgccaaaacaataccaccgaaatttatacacagaagt |
115 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| ||| | |||| |||| || | ||||||||||| |
|
|
| T |
14450 |
atgatacaaaattaaagagtatcatccaagagttgattgaagaaagtgataatgatgatccaaaactaaaataataacatcaaaatttataca------- |
14358 |
T |
|
| Q |
116 |
ttaggacaatagcccttaattaaaattataaccaaccaattttcaacaaaagtgtagaaaagtatttattgcaaaattgatatcaatagaaggcatggtg |
215 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
14357 |
--------atagcccttaattaaa-ttataaccaagtaattttcaacaaaagtgtagaaaagtatttgttctgaaattgatatcaatggaaggcatggtg |
14267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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