View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19766_low_5 (Length: 329)
Name: NF19766_low_5
Description: NF19766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19766_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 36149103 - 36149404
Alignment:
| Q |
19 |
gtaaacgggtcaagtgacctggtgctagggttggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacg |
118 |
Q |
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| T |
36149103 |
gtaaacgggtcaagtgacctggtgctagggttggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacg |
36149202 |
T |
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| Q |
119 |
ttcatatgataagccattctcagcaccataagtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaact |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149203 |
ttcatatgataagccattctcagcaccataagtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaact |
36149302 |
T |
|
| Q |
219 |
tcatgcaatggtggtggagagtcattttcttttgtctctgcatcagtctcatcttccttcacgtgtgctacttcttgtccttgattaggagagtgttctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149303 |
tcatgcaatggtggtggagagtcattttcttttgtctctgcatcagtctcatcttccttcacgtgtgctacttcttgtccttgattaggagagtgttctt |
36149402 |
T |
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| Q |
319 |
ct |
320 |
Q |
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|| |
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| T |
36149403 |
ct |
36149404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 36083206 - 36083412
Alignment:
| Q |
19 |
gtaaacgggtcaagtgacctggtgctagggttggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacg |
118 |
Q |
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||||||||||||||||||||||||| || ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36083206 |
gtaaacgggtcaagtgacctggtgccagcgttggatatgcatgaaattgttccgttgttatcattaggttaagaactgaatcacctatgtattccaaacg |
36083305 |
T |
|
| Q |
119 |
ttcatatgataagccattctcagcaccataagtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaact |
218 |
Q |
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||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||| ||| |
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| T |
36083306 |
ctcataagataagccattctcagcaccgtaagtacagtgagtgaaagcctcttctagcaatagtatgttcttaaattcgtattctagaattgcttccact |
36083405 |
T |
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| Q |
219 |
tcatgca |
225 |
Q |
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||||||| |
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| T |
36083406 |
tcatgca |
36083412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 36083456 - 36083504
Alignment:
| Q |
272 |
ttccttcacgtgtgctacttcttgtccttgattaggagagtgttcttct |
320 |
Q |
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|||||||| |||| || ||||||||||||| || ||||||||||||||| |
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| T |
36083456 |
ttccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttct |
36083504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 156 - 294
Target Start/End: Complemental strand, 26527763 - 26527625
Alignment:
| Q |
156 |
tgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgcaatggtggtggagagtcattttcttttgtct |
255 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| |
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| T |
26527763 |
tgagtgaaagcctcttctagtaatagtttgttcttgaattcgtattcaagaatggcttccacttcatgcggtggtggtggagaatcattttcttctgtct |
26527664 |
T |
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| Q |
256 |
ctgcatcagtctcatcttccttcacgtgtgctacttctt |
294 |
Q |
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| |||||| |||||| |||||||| |||| || |||||| |
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| T |
26527663 |
ccgcatcattctcattttccttcatgtgttcttcttctt |
26527625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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