View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19766_low_9 (Length: 303)
Name: NF19766_low_9
Description: NF19766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19766_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 34353088 - 34352896
Alignment:
| Q |
1 |
tgagaatatccaagcaattcagcgatgaatatccattttttctgttgacatggtacagctcataggaaaaacgccaatggtttacctgaagagtatcact |
100 |
Q |
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| T |
34353088 |
tgagaatatccaagcaattcagcgatgaatatccattttttctgttgacatggtacagctcataggaaaaacgccaatggtttacctgaagagtatcact |
34352989 |
T |
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| Q |
101 |
aagggctcagttgctaatattgctgctaagcttgagcttatggagccatgttgtagtgtcaaagacaggtaggtgtgtgtgacagcattagtt |
193 |
Q |
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| T |
34352988 |
aagggctcagttgctaatattgctgctaagcttgagcttatggagccatgttgtagtgtcaaagacaggtaggtgtgtgtgacagcattagtt |
34352896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 34358679 - 34358547
Alignment:
| Q |
49 |
catggtacagctcataggaaaaacgccaatggtttacctgaagagtatcactaagggctcagttgctaatattgctgctaagcttgagcttatggagcca |
148 |
Q |
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| T |
34358679 |
catggcacaactcataggaaaaacgccaatggtttacctgaagagtatcactaagggctcagttgctaacattgctgcaaagcttgaggttatggagcct |
34358580 |
T |
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| Q |
149 |
tgttgtagtgtcaaagacaggtaggtgtgtgtg |
181 |
Q |
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| T |
34358579 |
tgttgtagtgtcaaagacaggtagatgtgtgtg |
34358547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 34369126 - 34369011
Alignment:
| Q |
56 |
cagctcataggaaaaacgccaatggtttacctgaagagtatcactaagggctcagttgctaatattgctgctaagcttgagcttatggagccatgttgta |
155 |
Q |
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| T |
34369126 |
cagctcataggaaaaacaccaatggtttatctgaatagcatcgcaaagggttccgttgctaatattgctgctaagcttgagattatggagccttgttgta |
34369027 |
T |
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| Q |
156 |
gtgtcaaagacaggta |
171 |
Q |
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| T |
34369026 |
gtgtcaaagacaggta |
34369011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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