View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19767_high_1 (Length: 668)
Name: NF19767_high_1
Description: NF19767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19767_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 128 - 628
Target Start/End: Original strand, 27326732 - 27327232
Alignment:
| Q |
128 |
tgtttgccaaaacgagagtttcatgctgtcattcttaaaaattcatcgttactccaatgatctaccatagacggttactatcaagtctctgaatgtgtag |
227 |
Q |
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| T |
27326732 |
tgtttgccaaaacgagagtttcacgttgttattcttaaaatttcatcgtcaatccaatgatctaccatagacggttactatcaagtctccgaatgtgtag |
27326831 |
T |
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| Q |
228 |
tctagtcgtgtgagttgatatgtttaacgagtattaagaaggaggttcatagttcaatccttgttattattaactaactctctcttgttctaacaaatta |
327 |
Q |
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| T |
27326832 |
tctagtcgtgtgagttgatatgtttaactagtattaagaaggaggttcatagttcaatccttgttattattaactaactctctcttgttctaacaaatta |
27326931 |
T |
|
| Q |
328 |
accactaatggtttgatttatgattaattactgaagctaatcaatcatggtgtgtcggagacgctgagggatgaggttttaagaacaagccaatgctttt |
427 |
Q |
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| T |
27326932 |
accactaatggtttgttttatgattaattactgaagctaatcaatcatggggtatctgagacgctgagggatgaggttttaagaacaagccaatgctttt |
27327031 |
T |
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| Q |
428 |
tcgatctgccaagtgaagnnnnnnnggagtacataagtgaaaagctatttgatccaattagatgtggtacaagctttaatttgaaggtagacaaaaccct |
527 |
Q |
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| T |
27327032 |
tcgatctgccaagtgaagaaaaaaaggagtacataagtgaaaagctatttgatccaattagatgtggtacaagctttaatttgaaggtagacaaaaccct |
27327131 |
T |
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| Q |
528 |
ctattggagagattatctcaaatgttatgttcatcctcaatttgatgctccttccaagccccctgggtttaggtatatcattcttcttgcacttttatta |
627 |
Q |
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| T |
27327132 |
ctattggagagattatctcaaatgttatgttcatcctcaatttgatgctccttccaagccccctgggtttaggtatatcattcttcttgcacttttatta |
27327231 |
T |
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| Q |
628 |
c |
628 |
Q |
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| T |
27327232 |
c |
27327232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 27326554 - 27326640
Alignment:
| Q |
19 |
cttgccgcgattggggtttctttatggtacaaatatttaaactcaaataatgtatacttttacatttattttggacagtatatatttt |
106 |
Q |
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| T |
27326554 |
cttgccgcgattggggtttctttatggtacaaatatttaaactaaaatagtatatacttttacattt-ttttggaccgtatatatttt |
27326640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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