View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19767_high_10 (Length: 210)
Name: NF19767_high_10
Description: NF19767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19767_high_10 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 1087748 - 1087548
Alignment:
| Q |
10 |
ataatactccaagtatcgtcttctggaatccaattaacacgttctcgatgactagttgtttggttcaaataagttattgaaacattactcttgtttacaa |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1087748 |
ataacactccaagtatcgtcttctggaatccaattaacacgttcgcgatgactagttgtttggttcaaataagttattgaaacattactcttgtttacaa |
1087649 |
T |
|
| Q |
110 |
gactatatatgtaataaacttcatttgaattgttcaccgacgttgtaattacaacaattgaagtaacaatctccacaggtgctccactaaatccaactcc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1087648 |
gactatatatgtaataaacttcatttgaattgttcaccgacgttgtaattacaacaattgaagtaacaatctccacaggtgctccactaaatccaactcc |
1087549 |
T |
|
| Q |
210 |
a |
210 |
Q |
| |
|
| |
|
|
| T |
1087548 |
a |
1087548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 67 - 210
Target Start/End: Complemental strand, 1047217 - 1047074
Alignment:
| Q |
67 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcaccgacgttgtaattacaacaa |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||| || |||||| |
|
|
| T |
1047217 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgagtaataaacctcatttgaattgttcacagatcttgcaacaacaacag |
1047118 |
T |
|
| Q |
167 |
ttgaagtaacaatctccacaggtgctccactaaatccaactcca |
210 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
1047117 |
ttgatgtaacaatctccataggcgctccactaaatccaactcca |
1047074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 67 - 210
Target Start/End: Complemental strand, 1072030 - 1071887
Alignment:
| Q |
67 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcaccgacgttgtaattacaacaa |
166 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||| | |||||| || |||| |
|
|
| T |
1072030 |
gtttggttcaaataagttattgaaaccatactcttgtttacaagactatatgtgaaataaacttcatttgaattgatcacaggtgttgtagctataacac |
1071931 |
T |
|
| Q |
167 |
ttgaagtaacaatctccacaggtgctccactaaatccaactcca |
210 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
1071930 |
ttgacgtaataatctccataggtgctccactaaatccaactcca |
1071887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 66 - 210
Target Start/End: Complemental strand, 1104245 - 1104104
Alignment:
| Q |
66 |
tgtttggttcaaataagttattgaaacattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcaccgacgttgtaattacaaca |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| | ||| || | ||| |
|
|
| T |
1104245 |
tgtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaattttg---tttcgaca |
1104149 |
T |
|
| Q |
166 |
attgaagtaacaatctccacaggtgctccactaaatccaactcca |
210 |
Q |
| |
|
||| ||||||| || || | |||||||||||||||||||||||| |
|
|
| T |
1104148 |
atttgagtaacagtcaccgcgggtgctccactaaatccaactcca |
1104104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University