View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19767_high_2 (Length: 533)
Name: NF19767_high_2
Description: NF19767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19767_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 3931166 - 3930649
Alignment:
| Q |
1 |
caatgagatcatcattatctctgcctggcacactttgcacaaagccaacactatttggtttagcaccttgccacccatgttttggttctgtgactgttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3931166 |
caatgagatcatcattatctctgcctggcacactttgcacaaagccaacactatttggtttagcaccttgccacccatgttttggttctgtgactgttct |
3931067 |
T |
|
| Q |
101 |
tttaaacttcacccaatctaatacgtcaaatctacatatagcaataagtaaacaaattttaatgcatatttgctgcatatggaaaaattataaatatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3931066 |
tttaaacttcacccaatctaatacgtcaaatctacatatagcaataagtaaacaaattttaatgcatatttgctgcatatggaaaaattataaatatcat |
3930967 |
T |
|
| Q |
201 |
atccagcnnnnnnnntccataaaatgtttttcacccacgttataggagataaatgaactcctctattcacgagtgcctccatcaaatcttcggataacaa |
300 |
Q |
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|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3930966 |
atccagcaaaaaaaatccataaaatgtttttcacccacgttataggagataaatgaactcctctattcacgagtgcctccatcaaatcttcggataacca |
3930867 |
T |
|
| Q |
301 |
ctctcggggtagaccttctaagatgtctcctagtgtcttgcctctatcacaaaacaaatctatcagtcacggtaatgatttggaattcaatgtgtctaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3930866 |
ctctcggggtagaccttctaagatgtctcgtagtgtcttgcctctatcacaaaacaaatctatcagtcacggtaatgatttggaattcaatgtgtctaat |
3930767 |
T |
|
| Q |
401 |
atgctgatgtagacgaacaattaacagctaaacac-aaatatttgttgagaataactattcagatgttt--agagactaaaaaataattgaaatttaatg |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
3930766 |
atgctgatgtagacgaacaattaacagctaaacacaaaatatttgttgagaataactattcagatgtttagagagactaaaaaataattgaaatttaatg |
3930667 |
T |
|
| Q |
498 |
aaaatgcagtgtcttaag |
515 |
Q |
| |
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|||||||||||||||||| |
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| T |
3930666 |
aaaatgcagtgtcttaag |
3930649 |
T |
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