View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19767_low_10 (Length: 252)
Name: NF19767_low_10
Description: NF19767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19767_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 32688997 - 32689239
Alignment:
| Q |
1 |
cacgaaaactgcatttttcacccttttgtaagtcaatttggactttggtgtctgcatgaaagttgtggatatggatgtgaaatttcatattccactagcc |
100 |
Q |
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| T |
32688997 |
cacgaaaattgcatttttcatccttttgtaagttaaattggactttggtgtctgcatgaaagtgttggatatggatgtgaaatttcatattccactggcc |
32689096 |
T |
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| Q |
101 |
tatctccattatcagtcctacaacttcatatatgatttaaacactgcacaaataacatgtagagatcagcatgcctcactagtgttctttcactcttttt |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32689097 |
tatctccattatgagtcctacaacttcatatatgattaaaacaccgcacaaataacatgtagagatcagcatgcctcactagtgttctttcactcttttt |
32689196 |
T |
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| Q |
201 |
tccatttctttt-cccataacgtccgtgatggcaataccccaa |
242 |
Q |
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| T |
32689197 |
tccatttcttttccccataacgtccgtgatggcaataccccaa |
32689239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 36541913 - 36542110
Alignment:
| Q |
12 |
catttttcacccttttgtaagtcaatttggactttggtgtctgcatgaaagttgtggatatggatgtgaaatttcatattccactagcctatctccatta |
111 |
Q |
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||||||||||| ||||||| | || |||||||||||||||| ||| |||||| | ||||||||||| | |||||| ||||||| | | |||||| |
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| T |
36541913 |
catttttcacctttttgtaggccacattggactttggtgtcttcataaaagttctagatatggatgttatctttcatgttccactgttccttatccattt |
36542012 |
T |
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| Q |
112 |
tcagtcctacaacttcatatatgatttaaacactgcacaaataacatgtagagatcagcatgcctcactagtgttctttcactcttttttccatttct |
209 |
Q |
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| T |
36542013 |
tgtgacctggaactccatatatgattaaaataccgcacaaacttcacgtagagatcaacatgcctcactcgttttcttttactcttttccccatttct |
36542110 |
T |
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