View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19767_low_3 (Length: 493)
Name: NF19767_low_3
Description: NF19767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19767_low_3 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 194 - 390
Target Start/End: Complemental strand, 4806214 - 4806018
Alignment:
| Q |
194 |
tttaccagaagttgctgaatattggaaataagttatgaagatcaacgattatcagaagagcaggtttgttaactgcatggttgcatcaatgtttagcata |
293 |
Q |
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| T |
4806214 |
tttaccagaagttgctgaatattggaaataagttatgaagatcaacgattattagaagagcaggtttgtaaactgcatggttgcatcaatgtttagcata |
4806115 |
T |
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| Q |
294 |
gttgctaaaaaacgatggccgtttcaagaaggataccggtgatacgcgggagagtccggctattgactgtgttagtgttctaactgagtgggatgat |
390 |
Q |
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| T |
4806114 |
gttgctaaaagacgatggccgtttcaagaaggataccggtgatacgcgggagaggccggctattgactgtgttagtgttctaactgagtgggatgat |
4806018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 4819141 - 4819089
Alignment:
| Q |
201 |
gaagttgctgaatattggaaataagttatgaagatcaacgattatcagaagag |
253 |
Q |
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| T |
4819141 |
gaagtttctgaatattagaaacaagttatcaagatcaacgattatcagaagag |
4819089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 34590509 - 34590704
Alignment:
| Q |
1 |
ctagaattttaaaaattactgcaattatacaagttaaattgcacttgcacaccctggattatatgtcttgcaccaacacaaatttaatccaaagattttg |
100 |
Q |
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| T |
34590509 |
ctagaattttaaaaattactgcaattatataagttaaattgcacttgcacatcctggattatatgtcttgcaccaacacaagtttaatctaaagattttg |
34590608 |
T |
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| Q |
101 |
cactcaacaaatgctttttgtctctcctgacacggaacaggcgttgcacatacaacatttttcacttctctaccgtcagcacttagcttttggttt |
196 |
Q |
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| T |
34590609 |
cattcaacaaatgctttttgtctcacctgacacggaacaggcgttgcacatacaatatttttcacttctctactgtcagcacttagcttttggttt |
34590704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 32692370 - 32692565
Alignment:
| Q |
1 |
ctagaattttaaaaattactgcaattatacaagttaaattgcacttgcacaccctggattatatgtcttgcaccaacacaaatttaatccaaagattttg |
100 |
Q |
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| T |
32692370 |
ctagaattttaaaaattattgcaattatactagttaaattgcacttgcacaccctagattatatgtcttgcaccaacacaagtttaatccaaagattttg |
32692469 |
T |
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| Q |
101 |
cactcaacaaatgctttttgtctctcctgacacggaacaggcgttgcacatacaacatttttcacttctctaccgtcagcacttagcttttggttt |
196 |
Q |
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| T |
32692470 |
cactcaacaaatactttttgtctcacctgacacggatcaggcgttgcacatacaacatttttcacttctctagtgtcagcacttagtttttggttt |
32692565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 24762136 - 24762326
Alignment:
| Q |
6 |
attttaaaaattactgcaattatacaagttaaattgcacttgcacaccctggattatatgtcttgcaccaacacaaatttaatccaaagattttgcactc |
105 |
Q |
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| T |
24762136 |
attttaaaaattacagcaagtatactagttaaattgcaattgcacaccctggattatatgtcttgcaccaacacaagtttaatccaaagattttgcactc |
24762235 |
T |
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| Q |
106 |
aacaaatgctttttgtctctcctgacacggaacaggcgttgcacatacaacatttttcacttctctaccgtcagcacttagcttttggttt |
196 |
Q |
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| T |
24762236 |
aaccaatgctttttgtctcacctgacacggaacagacgttgcacatacaacatttttcacttctctactgtcagcacttagattttggttt |
24762326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 58 - 196
Target Start/End: Complemental strand, 24765966 - 24765828
Alignment:
| Q |
58 |
attatatgtcttgcaccaacacaaatttaatccaaagattttgcactcaacaaatgctttttgtctctcctgacacggaacaggcgttgcacatacaaca |
157 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||| |
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| T |
24765966 |
attatatgtcttgcaccaacacaagtttaatccaaagattttgcactcaaccaatgctttttgtctcacctgacacggaacagacgttgcacttacaaca |
24765867 |
T |
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| Q |
158 |
tttttcacttctctaccgtcagcacttagcttttggttt |
196 |
Q |
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| T |
24765866 |
tttttcacttctctactatcagcacttagcttttggttt |
24765828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 479
Target Start/End: Complemental strand, 33106 - 33032
Alignment:
| Q |
402 |
cattaacta-gattcaaccattgtgtaacatttgaaattctctatagtaatgaatgatattcgaccaccctcttaaatg |
479 |
Q |
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||||||||| || |||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
33106 |
cattaactaagactcaaccattgtgtaacattttaaattctctatagta----atgatattcaaccaccctcttaaatg |
33032 |
T |
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