View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19767_low_6 (Length: 444)
Name: NF19767_low_6
Description: NF19767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19767_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 42237122 - 42237398
Alignment:
| Q |
1 |
cggtcaaacttgcagggtctgcaacttctgtcacacttaatgggacccattttcatcnnnnnnnnnnnnnnnctctgttcaaataatatggtacagtcag |
100 |
Q |
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| T |
42237122 |
cggtcaaacttgcagggtctgcaatttctgtcacacttaatgggacccattttcatctttttttaattttttctctgttcaaataatatggtacagtcag |
42237221 |
T |
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| Q |
101 |
ttccatgttatttaaaatacggttgctatctgttatagttttctgaccgtttgatcaaacagtgattaatttgcatcagacggttcatgaagagattatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42237222 |
ttccatgttatttaaaatacggttgctatctgttatagttttctgaccgtttgatcaaacagtgattaatttgcatcagacggttcatgaagagattatg |
42237321 |
T |
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| Q |
201 |
tggtgttattggtggtatcttagaccacgttgcttcactgcacaaagattcttgttcccattaaacaaactaggaaa |
277 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42237322 |
tggtgtcattggtggtatcttagaccacgttgcttcactgcacaaagattcttgttcccattaaacaaactaggaaa |
42237398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 347 - 444
Target Start/End: Original strand, 42237468 - 42237565
Alignment:
| Q |
347 |
gggtatacagtacaatcatgcagaccagtgtgtgaaagggtaccacctcatgattgtcatggattttgtgggctatccaagaatatagattctcagtt |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42237468 |
gggtatacagtacaatcatgcagaccagtgtgtgaaagggtaccacctcatgattgtcatggattttgtgggctatccaagaatatagattctcagtt |
42237565 |
T |
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