View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19767_low_7 (Length: 320)

Name: NF19767_low_7
Description: NF19767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19767_low_7
NF19767_low_7
[»] chr2 (41 HSPs)
chr2 (172-303)||(38589265-38589402)
chr2 (184-295)||(45273388-45273504)
chr2 (182-292)||(20171417-20171530)
chr2 (174-269)||(21252571-21252666)
chr2 (35-105)||(38589469-38589539)
chr2 (180-290)||(158072-158184)
chr2 (174-269)||(11073957-11074054)
chr2 (180-267)||(15507447-15507533)
chr2 (172-259)||(44898099-44898186)
chr2 (180-268)||(36244041-36244129)
chr2 (180-259)||(4316694-4316773)
chr2 (180-269)||(4700965-4701054)
chr2 (180-290)||(11083899-11084010)
chr2 (174-269)||(33659693-33659788)
chr2 (180-289)||(4959364-4959474)
chr2 (180-303)||(16806519-16806644)
chr2 (180-303)||(16845800-16845925)
chr2 (180-257)||(42756787-42756864)
chr2 (174-269)||(150283-150376)
chr2 (197-268)||(29408796-29408867)
chr2 (174-269)||(41541035-41541130)
chr2 (174-228)||(25965918-25965972)
chr2 (175-290)||(1397446-1397563)
chr2 (180-267)||(3309844-3309930)
chr2 (180-254)||(32113373-32113447)
chr2 (180-269)||(1770183-1770272)
chr2 (176-269)||(13386416-13386508)
chr2 (180-257)||(27746464-27746541)
chr2 (202-259)||(37814534-37814591)
chr2 (179-248)||(42872278-42872346)
chr2 (174-269)||(20891309-20891401)
chr2 (180-256)||(33659554-33659630)
chr2 (174-268)||(13140894-13140987)
chr2 (179-248)||(41117420-41117490)
chr2 (179-289)||(34424758-34424870)
chr2 (197-269)||(43042906-43042976)
chr2 (192-266)||(37360345-37360420)
chr2 (176-266)||(408495-408584)
chr2 (180-266)||(29882173-29882259)
chr2 (208-269)||(7486320-7486381)
chr2 (196-284)||(2218214-2218306)
[»] chr1 (29 HSPs)
chr1 (172-303)||(36319932-36320069)
chr1 (174-303)||(13254725-13254857)
chr1 (180-269)||(10101674-10101762)
chr1 (172-269)||(31623114-31623211)
chr1 (174-289)||(11238226-11238343)
chr1 (180-303)||(39386691-39386815)
chr1 (174-303)||(2655703-2655838)
chr1 (187-303)||(6295713-6295832)
chr1 (174-269)||(1674772-1674866)
chr1 (174-292)||(3901012-3901130)
chr1 (205-303)||(4671439-4671540)
chr1 (182-265)||(10430529-10430612)
chr1 (174-292)||(50488740-50488858)
chr1 (205-303)||(52414961-52415062)
chr1 (180-289)||(788265-788377)
chr1 (180-266)||(52281714-52281800)
chr1 (175-260)||(43021124-43021209)
chr1 (205-269)||(40519202-40519266)
chr1 (180-237)||(23698760-23698817)
chr1 (180-221)||(23699505-23699546)
chr1 (205-290)||(23699408-23699495)
chr1 (180-221)||(30280007-30280048)
chr1 (175-220)||(39157049-39157094)
chr1 (180-221)||(52414910-52414951)
chr1 (174-221)||(32768959-32769006)
chr1 (205-290)||(30280058-30280144)
chr1 (172-217)||(4671380-4671425)
chr1 (197-242)||(21535847-21535892)
chr1 (209-303)||(32769020-32769118)
[»] chr6 (19 HSPs)
chr6 (180-302)||(8049176-8049301)
chr6 (180-289)||(9095750-9095862)
chr6 (180-269)||(14093790-14093879)
chr6 (180-280)||(25056487-25056586)
chr6 (180-269)||(2437839-2437928)
chr6 (175-290)||(6111104-6111221)
chr6 (180-303)||(7972600-7972725)
chr6 (179-248)||(4122777-4122846)
chr6 (180-267)||(4665875-4665962)
chr6 (180-289)||(21527306-21527417)
chr6 (186-269)||(34889064-34889147)
chr6 (180-295)||(23410480-23410597)
chr6 (203-248)||(9353140-9353185)
chr6 (172-221)||(26252669-26252718)
chr6 (180-248)||(4184686-4184754)
chr6 (174-258)||(21014231-21014315)
chr6 (205-269)||(26252595-26252659)
chr6 (201-247)||(7833532-7833578)
chr6 (182-238)||(6396639-6396696)
[»] chr4 (38 HSPs)
chr4 (173-304)||(54982716-54982853)
chr4 (183-303)||(50720899-50721023)
chr4 (174-292)||(34031976-34032095)
chr4 (174-269)||(37209987-37210082)
chr4 (174-290)||(46195737-46195855)
chr4 (174-303)||(9089580-9089712)
chr4 (172-269)||(45666288-45666385)
chr4 (174-277)||(23529505-23529609)
chr4 (174-269)||(25490453-25490548)
chr4 (180-246)||(6949088-6949154)
chr4 (180-248)||(24074135-24074203)
chr4 (174-303)||(45635415-45635550)
chr4 (180-289)||(24538286-24538396)
chr4 (204-303)||(33889622-33889723)
chr4 (174-303)||(38840378-38840514)
chr4 (197-270)||(25493839-25493912)
chr4 (174-255)||(38045403-38045484)
chr4 (172-289)||(38434219-38434335)
chr4 (180-269)||(19443572-19443661)
chr4 (174-258)||(20782459-20782543)
chr4 (180-269)||(37371408-37371496)
chr4 (194-266)||(2684687-2684758)
chr4 (211-294)||(47944430-47944516)
chr4 (203-303)||(2492863-2492967)
chr4 (205-302)||(667994-668094)
chr4 (177-221)||(668104-668148)
chr4 (174-266)||(21956484-21956576)
chr4 (181-269)||(30913531-30913618)
chr4 (180-290)||(49299844-49299953)
chr4 (180-271)||(28130487-28130578)
chr4 (201-248)||(49263014-49263061)
chr4 (197-292)||(38044900-38044996)
chr4 (180-228)||(21342253-21342301)
chr4 (205-269)||(41502560-41502624)
chr4 (195-269)||(33808885-33808959)
chr4 (205-291)||(1821567-1821655)
chr4 (175-269)||(27650830-27650924)
chr4 (179-266)||(29961512-29961604)
[»] chr7 (35 HSPs)
chr7 (175-301)||(2273481-2273609)
chr7 (180-303)||(4567311-4567435)
chr7 (174-259)||(37124163-37124248)
chr7 (180-303)||(35793074-35793202)
chr7 (179-303)||(16196780-16196906)
chr7 (176-303)||(10534975-10535104)
chr7 (174-289)||(15643324-15643442)
chr7 (176-295)||(39599667-39599786)
chr7 (181-295)||(28226544-28226661)
chr7 (174-290)||(3835645-3835762)
chr7 (174-289)||(24394206-24394323)
chr7 (174-295)||(36412812-36412933)
chr7 (176-290)||(43368776-43368889)
chr7 (180-289)||(39430582-39430693)
chr7 (180-280)||(2798601-2798702)
chr7 (174-269)||(39617533-39617624)
chr7 (180-267)||(4962941-4963028)
chr7 (175-290)||(27723280-27723397)
chr7 (180-269)||(7809198-7809287)
chr7 (215-293)||(2271879-2271958)
chr7 (174-303)||(8614796-8614926)
chr7 (189-266)||(1752593-1752670)
chr7 (180-225)||(14771456-14771501)
chr7 (180-225)||(15221908-15221953)
chr7 (205-269)||(39427421-39427486)
chr7 (175-219)||(47541757-47541800)
chr7 (180-237)||(39247325-39247381)
chr7 (180-221)||(39427370-39427411)
chr7 (174-266)||(14735061-14735151)
chr7 (186-269)||(37072387-37072467)
chr7 (180-248)||(44550026-44550094)
chr7 (180-267)||(25290615-25290702)
chr7 (174-207)||(2271947-2271980)
chr7 (197-238)||(10026250-10026291)
chr7 (220-284)||(27229608-27229675)
[»] chr5 (37 HSPs)
chr5 (174-303)||(12436700-12436829)
chr5 (174-297)||(1583450-1583575)
chr5 (180-280)||(17201223-17201322)
chr5 (172-269)||(11992219-11992316)
chr5 (180-269)||(17202829-17202918)
chr5 (174-297)||(8544707-8544828)
chr5 (174-266)||(36246289-36246381)
chr5 (180-303)||(19931833-19931957)
chr5 (174-289)||(32474168-32474284)
chr5 (180-303)||(39614829-39614960)
chr5 (189-303)||(19924893-19925008)
chr5 (179-268)||(32717984-32718073)
chr5 (174-229)||(28619980-28620035)
chr5 (175-303)||(36437312-36437438)
chr5 (174-228)||(19803649-19803703)
chr5 (197-269)||(14654941-14655013)
chr5 (175-266)||(39940312-39940404)
chr5 (197-267)||(1590163-1590233)
chr5 (174-269)||(20201623-20201722)
chr5 (197-303)||(19922151-19922258)
chr5 (180-268)||(16365728-16365815)
chr5 (174-218)||(42674141-42674185)
chr5 (179-259)||(18552520-18552604)
chr5 (205-303)||(43346638-43346737)
chr5 (180-266)||(17591643-17591728)
chr5 (180-225)||(17557953-17557998)
chr5 (210-303)||(18413332-18413426)
chr5 (172-242)||(14543734-14543805)
chr5 (179-291)||(39584818-39584934)
chr5 (180-252)||(39585773-39585847)
chr5 (180-221)||(249617-249658)
chr5 (205-269)||(249543-249607)
chr5 (180-248)||(13220058-13220126)
chr5 (175-214)||(36060247-36060286)
chr5 (214-256)||(14967142-14967184)
chr5 (187-248)||(36194044-36194105)
chr5 (185-221)||(37269450-37269486)
[»] chr8 (35 HSPs)
chr8 (180-303)||(32233625-32233752)
chr8 (174-269)||(34146174-34146269)
chr8 (180-295)||(25400467-25400586)
chr8 (180-295)||(25496646-25496765)
chr8 (172-295)||(27231762-27231892)
chr8 (183-289)||(7578183-7578292)
chr8 (174-297)||(1530564-1530688)
chr8 (174-269)||(39628288-39628384)
chr8 (174-269)||(39637838-39637934)
chr8 (176-292)||(40557204-40557319)
chr8 (179-297)||(38401562-38401683)
chr8 (180-303)||(1256688-1256816)
chr8 (172-289)||(16599353-16599473)
chr8 (180-269)||(14896626-14896715)
chr8 (197-303)||(16393718-16393828)
chr8 (174-269)||(7695293-7695388)
chr8 (180-269)||(4418567-4418655)
chr8 (201-269)||(38457289-38457357)
chr8 (176-295)||(41411436-41411555)
chr8 (181-289)||(3443706-3443816)
chr8 (185-267)||(9455236-9455318)
chr8 (174-238)||(30887895-30887958)
chr8 (204-303)||(29315832-29315934)
chr8 (204-259)||(3741656-3741711)
chr8 (197-295)||(34038905-34039006)
chr8 (180-238)||(1358940-1358998)
chr8 (197-259)||(5870769-5870831)
chr8 (180-238)||(44666214-44666272)
chr8 (203-269)||(45083025-45083091)
chr8 (197-269)||(2742936-2743008)
chr8 (175-218)||(29315946-29315989)
chr8 (175-221)||(3741601-3741647)
chr8 (180-237)||(11087124-11087181)
chr8 (179-238)||(4418914-4418974)
chr8 (180-228)||(39140400-39140448)
[»] chr3 (32 HSPs)
chr3 (180-289)||(25841913-25842024)
chr3 (172-267)||(45646587-45646682)
chr3 (180-303)||(37030937-37031057)
chr3 (174-287)||(19578321-19578438)
chr3 (174-295)||(20841310-20841430)
chr3 (180-267)||(45759956-45760043)
chr3 (174-303)||(5493542-5493678)
chr3 (182-291)||(20140988-20141098)
chr3 (182-291)||(23272051-23272161)
chr3 (180-254)||(27264108-27264182)
chr3 (180-269)||(2093771-2093860)
chr3 (180-254)||(19234007-19234081)
chr3 (175-269)||(34668672-34668766)
chr3 (180-284)||(2440637-2440740)
chr3 (176-295)||(54675157-54675275)
chr3 (180-289)||(9588740-9588852)
chr3 (180-293)||(375741-375859)
chr3 (172-269)||(25342380-25342476)
chr3 (197-269)||(45667468-45667540)
chr3 (180-269)||(296429-296519)
chr3 (175-268)||(633286-633379)
chr3 (180-248)||(1272421-1272489)
chr3 (172-290)||(27817404-27817524)
chr3 (172-242)||(1405214-1405284)
chr3 (205-269)||(21934484-21934548)
chr3 (197-257)||(7259718-7259778)
chr3 (172-228)||(29556544-29556600)
chr3 (197-303)||(16237554-16237661)
chr3 (179-267)||(19187668-19187756)
chr3 (205-303)||(44940831-44940932)
chr3 (174-221)||(44940942-44940989)
chr3 (180-238)||(10614595-10614653)
[»] scaffold0005 (2 HSPs)
scaffold0005 (175-297)||(256736-256859)
scaffold0005 (174-228)||(272419-272473)
[»] scaffold1130 (1 HSPs)
scaffold1130 (180-303)||(382-504)
[»] scaffold1327 (1 HSPs)
scaffold1327 (172-269)||(860-957)
[»] scaffold0006 (1 HSPs)
scaffold0006 (197-303)||(46545-46650)
[»] scaffold0118 (2 HSPs)
scaffold0118 (180-269)||(14916-15004)
scaffold0118 (175-238)||(15277-15339)
[»] scaffold0188 (1 HSPs)
scaffold0188 (180-259)||(6403-6482)
[»] scaffold1801 (1 HSPs)
scaffold1801 (231-287)||(1242-1301)


Alignment Details
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 172 - 303
Target Start/End: Complemental strand, 38589402 - 38589265
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaa------tttgt 265  Q
    ||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||      ||| |    
T  38589402 aaggtacgatttatcaattataccatttgtcaattacttttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaacttgttttttt 38589303  T
Q  266 ttttaaccaaagtttgtttctttttatcttcacattta 303  Q
    |||||||||||||||| |||||||||||||||||||||    
T  38589302 ttttaaccaaagtttgcttctttttatcttcacattta 38589265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 184 - 295
Target Start/End: Complemental strand, 45273504 - 45273388
Alignment:
Q  184 gtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaat-----ttgtttttaaccaaagt 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||| |||| |     || ||||||| ||||||    
T  45273504 gtcaattataccctttgtcaattactcttatctttttcaataaaactaattaatgatatctatttagaaaaataaagtttatattttttttaaacaaagt 45273405  T
Q  279 ttgtttctttttatctt 295  Q
    ||||||||| |||||||    
T  45273404 ttgtttcttgttatctt 45273388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 182 - 292
Target Start/End: Complemental strand, 20171530 - 20171417
Alignment:
Q  182 ttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg---tttttaaccaaagt 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||| |||||||||| ||||   ||||||| ||||||    
T  20171530 ttgtcaattataccctttgtcaattactcttatctttttcaataaaactaattaatgttatatatttggaaaactaaagtttgttatttttaaacaaagt 20171431  T
Q  279 ttgtttctttttat 292  Q
    ||| ||||| ||||    
T  20171430 ttggttcttgttat 20171417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 21252571 - 21252666
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||  ||||||||| ||| |||||    
T  21252571 ggtacgatttgtcaattatactctttgtcaattacacttatctttttcaataaaattaattaatgctatctatttgaaaaactaaagtttattttt 21252666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 38589539 - 38589469
Alignment:
Q  35 ttattctccacgaggttaaagtttcctacttaactcacatctatcataatcaataactattactctatccg 105  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  38589539 ttattctccacgaggttaaagtttcctaattaactcacatctatcataatcaataactattactccatccg 38589469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 180 - 290
Target Start/End: Complemental strand, 158184 - 158072
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgt--ttttaaccaaag 277  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||  |||||||  ||| ||||| ||||||||||||||||  |||||| |||||    
T  158184 atttgtcaattataccctttgcaaattactcttatctttttcaataaaactaattaattttatatatttggaaaactaaaatttgtttttttaaacaaag 158085  T
Q  278 tttgtttcttttt 290  Q
    ||||||| |||||    
T  158084 tttgtttgttttt 158072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 11074054 - 11073957
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataa--aatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||  ||| |||||||||||| |||||||| || |||| |||||||||    
T  11074054 ggtacaatttgtcaattataccctttgtcaattactcttatctttttctaaaactaattaattaatgctatttatttagagaattaaagtttgttttt 11073957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 15507447 - 15507533
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || ||  ||||||||| |||||||    
T  15507447 atttgtcaattataccctttgtcaattactcttatctttttcaataaact-aattaatgctatataattgaaaaactaaagtttgttt 15507533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 44898099 - 44898186
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa 259  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| |||||  |||||||||    
T  44898099 aaggtacgatttttcaattataccctttgtcaattactcttatctttttcaataaaactaattaatgttatatatttgaaaaactaaa 44898186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 36244129 - 36244041
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttt 268  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||  |||||||| ||| ||||| |||||||||| ||| ||||    
T  36244129 atttgtcaattataccctttgtcaattactcttatattttttaataaaactaattaatgttatatatttggaaaactaaagtttatttt 36244041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 4316694 - 4316773
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa 259  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||  |||||||| ||| ||||| ||||||||||    
T  4316694 atttgtcaattatatcttttgtcaattactcttatctttttcaataaaactaattaatgttatatatttggaaaactaaa 4316773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 4701054 - 4700965
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||| ||||||||||  ||||||||||||||||||| ||||||||||||| ||||||| |||| ||||| ||||||||||  ||||||||    
T  4701054 atttatcaattatactatttgtcaattactcttatcgttttcaataaaattaattaatactatatatttggaaaactaaatattgttttt 4700965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 11083899 - 11084010
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt-aaccaaagt 278  Q
    |||||| ||||||||| |||||||||| |||| |||||||| |||||||  |||||||| ||| |||||  ||||||||| ||||||||| || ||||||    
T  11083899 atttgttaattataccttttgtcaatttctctgatcttttttaataaaactaattaatgttatatatttgaaaaactaaagtttgttttttaaacaaagt 11083998  T
Q  279 ttgtttcttttt 290  Q
    |||||| |||||    
T  11083999 ttgtttgttttt 11084010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 33659693 - 33659788
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||  |||||||  ||| |||||  |||||| || |||||||||    
T  33659693 ggtataatttgtcaattatatcatttgtcaattactcttatctttttcaataaaactaattaatattatatatttgaaaaactgaagtttgttttt 33659788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 4959474 - 4959364
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatt-tgtttttaaccaaagt 278  Q
    |||||||||||||||| ||||||||| | ||||||  |||| |||||||| |||||||||||| ||||| || ||||||| || | ||||||| ||||||    
T  4959474 atttgtcaattataccgtttgtcaatcattcttatagtttttaataaaattaattaatgctatatatttggataactaaagttgtttttttaaacaaagt 4959375  T
Q  279 ttgtttctttt 289  Q
    |||||| ||||    
T  4959374 ttgtttgtttt 4959364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 16806644 - 16806519
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatc-aattaatgctatctatttagaaaactaaaatt-tgtttttaaccaaag 277  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| |||| | |||||||| | |||||||  ||||||||| || | ||||||| ||||     
T  16806644 atttgtcaattataccctttgtcaattacacttatatttttcaaaaaaaactaattaatgttgtctatttgaaaaactaaagttatttttttaaacaaaa 16806545  T
Q  278 tttgtttctttttatcttcacattta 303  Q
    |||| ||||| ||||| ||| |||||    
T  16806544 tttgattcttgttatcctcaaattta 16806519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 16845925 - 16845800
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatc-aattaatgctatctatttagaaaactaaaatt-tgtttttaaccaaag 277  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| |||| | |||||||| | |||||||  ||||||||| || | ||||||| ||||     
T  16845925 atttgtcaattataccctttgtcaattacacttatatttttcaaaaaaaactaattaatgttgtctatttgaaaaactaaagttatttttttaaacaaaa 16845826  T
Q  278 tttgtttctttttatcttcacattta 303  Q
    |||| ||||| ||||| ||| |||||    
T  16845825 tttgattcttgttatcctcaaattta 16845800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 42756787 - 42756864
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaacta 257  Q
    |||||||||||||| | ||||||||||| |||||| |||||||||||||  |||||||||||| |||||| |||||||    
T  42756787 atttgtcaattatatcttttgtcaattattcttatatttttcaataaaactaattaatgctatatatttaaaaaacta 42756864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 150376 - 150283
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||| ||| ||||||||||||||||||||||||||||||  |||||||||||||  |||||||| ||| |||||  ||||||||| |||| ||||    
T  150376 ggtacgattcgtcaattataccctttgtcaattactctta--tttttcaataaaactaattaatgttatatatttgaaaaactaaagtttgatttt 150283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 29408867 - 29408796
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttt 268  Q
    ||||||||||||| ||||||||||||||||||  |||||||| |||||||||  ||||||||| ||||||||    
T  29408867 tttgtcaattacttttatctttttcaataaaagtaattaatgttatctatttgcaaaactaaagtttgtttt 29408796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 41541035 - 41541130
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||| ||||| | ||||||| | ||||||| ||||||||||||||||||||||||  |||||||||||| |||||  ||||||||| ||| |||||    
T  41541035 ggtataatttataaattatatcttttgtcatttactcttatctttttcaataaaactaattaatgctatatatttgaaaaactaaagtttattttt 41541130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 25965972 - 25965918
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaa 228  Q
    ||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  25965972 ggtacgatttgtcaactataccctttgtcaattactcttatatttttcaataaaa 25965918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 290
Target Start/End: Original strand, 1397446 - 1397563
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttatctttttcaa-taaaatcaattaatgctatctatttagaaaactaaaatttg-tttttaac 272  Q
    |||| ||||| |||| ||||||||||||||||||| ||||||||||    |||||  ||||||||||||||||||  |||| |||| |||| |||||||     
T  1397446 gtacgatttggcaataataccctttgtcaattacttttatcttttttttgtaaaactaattaatgctatctatttgaaaaattaaagtttgttttttaat 1397545  T
Q  273 caaagtttgtttcttttt 290  Q
    |||||||||||| |||||    
T  1397546 caaagtttgtttgttttt 1397563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 3309930 - 3309844
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt 267  Q
    ||||||||||||||   ||||||||||||| |||| |||||||||||||  ||||| ||||||||||||  ||||||||| |||||||    
T  3309930 atttgtcaattatagaatttgtcaattacttttat-tttttcaataaaactaattattgctatctatttgaaaaactaaagtttgttt 3309844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 32113447 - 32113373
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaa 254  Q
    |||||||||||||| ||||| ||||||| |||||| |||||||||||||  |||||||| ||| ||||| |||||    
T  32113447 atttgtcaattatatcctttatcaattattcttatatttttcaataaaactaattaatgttatatatttggaaaa 32113373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 1770272 - 1770183
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||| ||||||||| | ||||||||| |||||||  |||||||||||||  |||||||| ||| |||||  ||||||||| |||||||||    
T  1770272 atttatcaattatatcatttgtcaatcactcttaattttttcaataaaactaattaatgttatatatttgaaaaactaaagtttgttttt 1770183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 269
Target Start/End: Original strand, 13386416 - 13386508
Alignment:
Q  176 tacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||||||||||||||  ||| |||||||||||||| |||||||||||| | ||||||||| || ||| |  ||||||||| ||| |||||    
T  13386416 tacaatttgtcaattatacattttctcaattactcttatttttttcaataaact-aattaatgccatgtatctgaaaaactaaagtttattttt 13386508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 27746464 - 27746541
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaacta 257  Q
    |||||||||||||||| |||||  |||||| |||| |||||||||||||  |||||||||||| |||||  |||||||    
T  27746464 atttgtcaattataccttttgtttattacttttatatttttcaataaaactaattaatgctatatatttgaaaaacta 27746541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 37814534 - 37814591
Alignment:
Q  202 caattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa 259  Q
    |||||||||||||||||||||||||||  ||| ||| ||||||||||| |||||||||    
T  37814534 caattactcttatctttttcaataaaactaataaattctatctatttaaaaaactaaa 37814591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 42872346 - 42872278
Alignment:
Q  179 aatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctattt 248  Q
    ||||||||||||||||| |||||||||||||||||| ||||| |||||| | |||||||| ||| |||||    
T  42872346 aatttgtcaattataccttttgtcaattactcttattttttttaataaact-aattaatgttatatattt 42872278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 20891401 - 20891309
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||||| ||||||||| | |||||||||||||||| |  ||||||||||||  |||||||| ||  ||||| |||||||||| |||||||||    
T  20891401 ggtacaatttatcaattatatcatttgtcaattactcttgt-attttcaataaaactaattaatgtta--tatttggaaaactaaagtttgttttt 20891309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 33659554 - 33659630
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaact 256  Q
    |||||||||||||||  ||| | |||||||||||| |||||||||||||  |||||||| ||| ||||| |||||||    
T  33659554 atttgtcaattatacaatttattaattactcttatatttttcaataaaactaattaatgttatatatttggaaaact 33659630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 13140987 - 13140894
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttt 268  Q
    |||| ||||| ||||||||||| ||  ||||||||||| || |||||||||||||  ||| |||| |||||||||  |||||| |||||||||||    
T  13140987 ggtataatttatcaattatacctttcttcaattactct-atatttttcaataaaactaataaatgttatctatttgaaaaactgaaatttgtttt 13140894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 41117420 - 41117490
Alignment:
Q  179 aatttgtcaattataccctttgtcaattactctta-tctttttcaataaaatcaattaatgctatctattt 248  Q
    |||||||||||||||  |||| ||||||||||||| | |||||||||||||  ||||||| ||||||||||    
T  41117420 aatttgtcaattatagactttctcaattactcttactatttttcaataaaactaattaatactatctattt 41117490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 34424870 - 34424758
Alignment:
Q  179 aatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtt--tttaaccaaa 276  Q
    ||||||||||||| |||||||||| |||| | |||| |||||||| ||||  |||||||  ||| ||||| |||||| ||| ||||||  ||||| ||||    
T  34424870 aatttgtcaattaaaccctttgtcgattattattatatttttcaacaaaactaattaatattatatatttggaaaacaaaagtttgtttgtttaaacaaa 34424771  T
Q  277 gtttgtttctttt 289  Q
    |||| ||| ||||    
T  34424770 gtttatttgtttt 34424758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 43042906 - 43042976
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||||||||||| | ||||  |||||||| |||||||| ||| |||||||||||||||| ||| |||||    
T  43042906 tttgtcaattactcttttttttt--aataaaattaattaatgttatatatttagaaaactaaagtttattttt 43042976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 37360345 - 37360420
Alignment:
Q  192 taccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctattt-agaaaactaaaatttgtt 266  Q
    |||||||| |||||||||||||| ||||||| |||||  |||||||| | ||||||| | ||||||||| ||||||    
T  37360345 taccctttctcaattactcttatatttttcactaaaactaattaatgttgtctatttaaaaaaactaaagtttgtt 37360420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 266
Target Start/End: Complemental strand, 408584 - 408495
Alignment:
Q  176 tacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtt 266  Q
    |||||||| |||||||||| ||||  | ||| |||||| ||||||||||||||  ||||||| |||| |||||| |||| |||| ||||||    
T  408584 tacaatttatcaattatactctttcccgatt-ctcttacctttttcaataaaactaattaatactatatatttaaaaaattaaagtttgtt 408495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 29882259 - 29882173
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtt 266  Q
    |||||| | ||||||||||| |||| ||||||||||||||| |||||||  ||| |||| ||| |||||  |||||| || ||||||    
T  29882259 atttgttacttataccctttctcaactactcttatctttttgaataaaactaatcaatgttatatatttgaaaaacttaactttgtt 29882173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 7486381 - 7486320
Alignment:
Q  208 ctcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||| |||||||||||||  |||||||| ||| ||||| |||||||||| | |||||||    
T  7486381 ctcttatatttttcaataaaactaattaatgttatatatttggaaaactaaagtctgttttt 7486320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 284
Target Start/End: Original strand, 2218214 - 2218306
Alignment:
Q  196 ctttgtcaattactcttatctttt--tcaataaaatcaattaatgctatctatttagaaaactaaaattt---gtttttaaccaaagtttgttt 284  Q
    |||| |||||||||||||| ||||  |||||||||  |||||||| ||||||||| |||||||||| |||    ||||||| ||||||||||||    
T  2218214 ctttctcaattactcttatttttttttcaataaaactaattaatgatatctattt-gaaaactaaagtttttaatttttaaacaaagtttgttt 2218306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 172 - 303
Target Start/End: Complemental strand, 36320069 - 36319932
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg------t 265  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||  ||||      |    
T  36320069 aaggtacgatttgtcaattataccatttgtcaattactcttatctttttcaataaaactaattaatgctatctatttggaaaactaatgtttgttttttt 36319970  T
Q  266 ttttaaccaaagtttgtttctttttatcttcacattta 303  Q
    |||||| ||||||||||||||| ||||||||| |||||    
T  36319969 ttttaaacaaagtttgtttcttgttatcttcaaattta 36319932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 13254857 - 13254725
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaat---ttgttttta 270  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||  |||||||||||||||||| || ||||||| |   || ||||||    
T  13254857 ggtacgatttgtcaattataccttttatcaattactcttatctttttcaataaaactaattaatgctatctatttggagaactaaagtttattattttta 13254758  T
Q  271 accaaagtttgtttctttttatcttcacattta 303  Q
    | |||| |||||||||| ||||||||| |||||    
T  13254757 aacaaaatttgtttcttattatcttcaaattta 13254725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 10101762 - 10101674
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||| | | ||||||||||||||| |||||||||| |||||||||    
T  10101762 atttgtcacttataccctttctcaattactcttatctttttcaataaaa-ctaataatgctatctatttggaaaactaaagtttgttttt 10101674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 31623211 - 31623114
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||| ||||| ||||||||||||||| ||||||| |||||| |||||| ||||||| |||||||| ||| ||||| ||||||||||||||||||||    
T  31623211 aaggtataatttatcaattataccctttatcaattattcttatatttttccataaaattaattaatgttatatatttcgaaaactaaaatttgttttt 31623114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 289
Target Start/End: Complemental strand, 11238343 - 11238226
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatt--tgtttttaa 271  Q
    ||||| |||||||| |||||||||||| |||||| |||||| |||||||||||||  |||||||| ||| ||||| |||||||||||||  | |||||||    
T  11238343 ggtacgatttgtcagttataccctttggcaattattcttatatttttcaataaaactaattaatgatatatatttggaaaactaaaatttatttttttaa 11238244  T
Q  272 ccaaagtttgtttctttt 289  Q
     |||||||||||| ||||    
T  11238243 acaaagtttgtttgtttt 11238226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 180 - 303
Target Start/End: Original strand, 39386691 - 39386815
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaat---ttgtttttaaccaaa 276  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  ||  ||||||| | |||||||| ||||| |||| |   || ||||||| ||||    
T  39386691 atttttcaattataccctttgtcaattactcttatctttttcaat--aactaattaatacaatctatttggaaaaataaagtttattttttttaaacaaa 39386788  T
Q  277 gtttgtttctttttatcttcacattta 303  Q
    ||||||||||| ||||||||| |||||    
T  39386789 gtttgtttcttgttatcttcaaattta 39386815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 303
Target Start/End: Original strand, 2655703 - 2655838
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa------atttgttt 267  Q
    ||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||  |||||||| ||| ||||| ||||||||||      |||| |||    
T  2655703 ggtacgatttatcaattataccatttgtcaattactcttatatttttcaataaaactaattaatgttatatatttggaaaactaaagtttttattttttt 2655802  T
Q  268 ttaaccaaagtttgtttctttttatcttcacattta 303  Q
    | || |||| |||||||||| ||||||||| |||||    
T  2655803 taaaacaaaatttgtttcttgttatcttcaaattta 2655838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 303
Target Start/End: Complemental strand, 6295832 - 6295713
Alignment:
Q  187 aattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaa---aatttgtttttaaccaaagtttgtt 283  Q
    ||||||||||||||||| ||||| |||||||||| |||||||  ||||||||||||||||||  ||||||||     ||| ||||||| |||| ||||||    
T  6295832 aattataccctttgtcacttacttttatctttttaaataaaactaattaatgctatctatttgaaaaactaattttttttttttttaaacaaaatttgtt 6295733  T
Q  284 tctttttatcttcacattta 303  Q
    |||| ||||||||| |||||    
T  6295732 tcttgttatcttcaaattta 6295713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 1674866 - 1674772
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||| |||||||||||||||| ||||||||||| |||||| |||||||||||||  |||||||| ||| |||||  ||||||||| |||||||||    
T  1674866 ggtacgatttgtcaattatacc-tttgtcaattattcttatatttttcaataaaactaattaatgttatatatttgaaaaactaaagtttgttttt 1674772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 292
Target Start/End: Original strand, 3901012 - 3901130
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt-aac 272  Q
    |||||||||| |||||||||||||||||  |||||||||||||||||||| ||||  |||||||| |||  ||||  ||||||||| ||| ||||| ||     
T  3901012 ggtacaatttatcaattataccctttgttgattactcttatctttttcaa-aaaactaattaatgttataaatttgaaaaactaaagtttttttttaaaa 3901110  T
Q  273 caaagtttgtttctttttat 292  Q
    ||||||||||||||| ||||    
T  3901111 caaagtttgtttcttgttat 3901130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 303
Target Start/End: Original strand, 4671439 - 4671540
Alignment:
Q  205 ttactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt---aaccaaagtttgtttctttttatcttcacatt 301  Q
    |||||||||||||||| |||||||  ||||||| |||| ||||| ||||||||||||||||||||   || |||| |||||||||| ||||||||| |||    
T  4671439 ttactcttatcttttttaataaaactaattaatactatatatttggaaaactaaaatttgtttttttaaaacaaaatttgtttcttattatcttcagatt 4671538  T
Q  302 ta 303  Q
    ||    
T  4671539 ta 4671540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 10430612 - 10430529
Alignment:
Q  182 ttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgt 265  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||  |||||||||||| |||||  |||||| || |||||    
T  10430612 ttgtcaattataccatttgtcaattactcttatcttttttaataaaactaattaatgctatatatttgcaaaactcaagtttgt 10430529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 292
Target Start/End: Complemental strand, 50488858 - 50488740
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt-aac 272  Q
    |||||||||| |||||||||||||||||  |||||||||||||||||||| ||||  |||||||| |||  ||||  ||||||||| ||| ||||| ||     
T  50488858 ggtacaatttatcaattataccctttgttgattactcttatctttttcaa-aaaactaattaatgttataaatttgaaaaactaaagtttttttttaaaa 50488760  T
Q  273 caaagtttgtttctttttat 292  Q
    ||||||||||||||| ||||    
T  50488759 caaagtttgtttcttgttat 50488740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 303
Target Start/End: Original strand, 52414961 - 52415062
Alignment:
Q  205 ttactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg---tttttaaccaaagtttgtttctttttatcttcacatt 301  Q
    |||||||||||||||| |||||||  |||||||| ||| ||||| |||||||||| ||||   ||||||| |||| |||||||||| ||||||||| |||    
T  52414961 ttactcttatcttttttaataaaactaattaatgttatatatttggaaaactaaagtttgttttttttaaacaaaatttgtttcttcttatcttcagatt 52415060  T
Q  302 ta 303  Q
    ||    
T  52415061 ta 52415062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 788377 - 788265
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt---aaccaaa 276  Q
    |||| ||||||||||| ||||||||||| ||| || |||||||||||||  |||||||| ||| ||||| ||||| |||| |||||||||   ||| |||    
T  788377 atttatcaattataccatttgtcaattattctaatatttttcaataaaactaattaatgttatatatttggaaaaataaagtttgttttttaaaacaaaa 788278  T
Q  277 gtttgtttctttt 289  Q
    |||||||| ||||    
T  788277 gtttgtttgtttt 788265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 52281714 - 52281800
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtt 266  Q
    |||||||| ||||| ||||| |||| |||||  ||||||||||||||||  |||||||| |||||||||| ||||||||| ||||||    
T  52281714 atttgtcacttatatcctttctcaactactcggatctttttcaataaaactaattaatgttatctatttaaaaaactaaagtttgtt 52281800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 43021124 - 43021209
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaa 260  Q
    |||| |||||||||||||||| |||| ||||||||||||| ||| |||||||||  |||||||| ||| |||||  ||||||||||    
T  43021124 gtacgatttgtcaattataccatttgccaattactcttatatttatcaataaaactaattaatgttatatatttgaaaaactaaaa 43021209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 40519266 - 40519202
Alignment:
Q  205 ttactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||||||||||| |||||||  |||||||||||| ||||| |||||||||| |||||||||    
T  40519266 ttactcttatcttttttaataaaactaattaatgctatatatttggaaaactaaagtttgttttt 40519202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 23698760 - 23698817
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaat 237  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||||||  |||||||    
T  23698760 atttgtcaattatatcctttgtcaattactcttatatttttaaataaaactaattaat 23698817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 23699546 - 23699505
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttc 221  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  23699546 atttgtcaattataccctttgtcaattactcgtatctttttc 23699505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 23699495 - 23699408
Alignment:
Q  205 ttactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgt--ttttaaccaaagtttgtttcttttt 290  Q
    |||| |||||||||||||||||||  |||||||||||| ||||| |||||||||| ||| |  |||||| ||||| |||||| |||||    
T  23699495 ttacgcttatctttttcaataaaactaattaatgctatatatttggaaaactaaagtttcttcttttaaacaaagattgtttgttttt 23699408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 30280007 - 30280048
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttc 221  Q
    ||||||||||||||||||||||||||||||| ||| ||||||    
T  30280007 atttgtcaattataccctttgtcaattactcgtatttttttc 30280048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 39157049 - 39157094
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttatcttttt 220  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||||    
T  39157049 gtacaatttgtcagttataccctttgttaattactcttattttttt 39157094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 52414910 - 52414951
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttc 221  Q
    |||||||||||||| |||||||||||||||| ||||||||||    
T  52414910 atttgtcaattataacctttgtcaattactcgtatctttttc 52414951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 32768959 - 32769006
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttc 221  Q
    ||||| ||||||||||||||| |||| |||||||||| ||||||||||    
T  32768959 ggtacgatttgtcaattatactctttatcaattactcgtatctttttc 32769006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 290
Target Start/End: Original strand, 30280058 - 30280144
Alignment:
Q  205 ttactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg-tttttaaccaaagtttgtttcttttt 290  Q
    ||||||||||||| || |||||||  |||||||| | | ||||| |||||||||| |||| ||||||| |||||||| ||| |||||    
T  30280058 ttactcttatcttctttaataaaactaattaatgttgtatatttggaaaactaaagtttgttttttaaacaaagtttatttattttt 30280144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 4671380 - 4671425
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctt 217  Q
    ||||||| |||| ||||||||||||||| |||||||||| ||||||    
T  4671380 aaggtacgatttttcaattataccctttatcaattactcgtatctt 4671425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 21535892 - 21535847
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctat 242  Q
    ||||||||||| |||||| |||||||||||||  ||||||||||||    
T  21535892 tttgtcaattattcttatatttttcaataaaactaattaatgctat 21535847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 32769020 - 32769118
Alignment:
Q  209 tcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt----aaccaaagtttgtttctttttatcttcacattta 303  Q
    |||||||||||| |||||||  |||||||| ||| |||||  ||||||||| ||| |||||    || |||| |||||||||| ||||||||| |||||    
T  32769020 tcttatcttttttaataaaactaattaatgatatatatttgaaaaactaaagtttattttttaaaaaacaaaatttgtttcttgttatcttcatattta 32769118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 302
Target Start/End: Original strand, 8049176 - 8049301
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt---ttaaccaaa 276  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| |||||||||| |||||||   |||| ||||    
T  8049176 atttatcaattttaccctttgtcaattactcttatctttttcaataaaactaattaatgatatctatttggaaaactaaagtttgtttttcttaaacaaa 8049275  T
Q  277 gtttgtttctttttatcttcacattt 302  Q
     |||||||||| ||||||||||||||    
T  8049276 atttgtttcttgttatcttcacattt 8049301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 9095862 - 9095750
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgt---ttttaaccaaa 276  Q
    |||||||||||||||| ||||||||||| |||||| |||||||||||||  |||||||||||| ||||| ||||||||||||||||   |||||| ||||    
T  9095862 atttgtcaattataccatttgtcaattattcttatatttttcaataaaactaattaatgctatatatttggaaaactaaaatttgttttttttaaacaaa 9095763  T
Q  277 gtttgtttctttt 289  Q
    |||||||| ||||    
T  9095762 gtttgtttgtttt 9095750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 14093879 - 14093790
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||| |||| |||||||||| ||| |||||    
T  14093879 atttgtcaattatactctttgtcaattactcttatctttttcaataaaactaattaatgctatcgattttgaaaactaaagtttattttt 14093790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 180 - 280
Target Start/End: Original strand, 25056487 - 25056586
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaaccaaagtt 279  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||| ||| ||| ||| |||||||    
T  25056487 atttgtcaatcatactctttgtcaattactcttatctttttcaataaaactaattaatgctatctatttggaaaactaaagttt-tttctaaacaaagtt 25056585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 2437928 - 2437839
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||  |||||||| ||||||||| |||||||||| ||| |||||    
T  2437928 atttgtcaattataccctttgtcaattattcttatttttttcaataaaactaattaatgatatctatttggaaaactaaatttttttttt 2437839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 290
Target Start/End: Complemental strand, 6111221 - 6111104
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg--tttttaac 272  Q
    |||| |||||||| ||||||| ||| |||||||||||||||||||| |||||||  |||||||| ||| ||||| |||||||||| ||||  |||||||     
T  6111221 gtacgatttgtcagttataccatttatcaattactcttatctttttaaataaaactaattaatgttatatatttggaaaactaaagtttgtttttttaaa 6111122  T
Q  273 caaagtttgtttcttttt 290  Q
    |||||||||||| |||||    
T  6111121 caaagtttgtttgttttt 6111104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 7972725 - 7972600
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg--tttttaaccaaag 277  Q
    |||| |||||||||| |||||||||||| ||| || |||||||||||||  |||||||| ||| |||||  ||||||||| ||||  ||||||| ||||     
T  7972725 atttatcaattatacactttgtcaattattctaatatttttcaataaaactaattaatgttatatatttgaaaaactaaagtttgtttttttaaacaaaa 7972626  T
Q  278 tttgtttctttttatcttcacattta 303  Q
    |||||||||| ||||||||| |||||    
T  7972625 tttgtttcttgttatcttcaaattta 7972600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 4122777 - 4122846
Alignment:
Q  179 aatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctattt 248  Q
    ||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  4122777 aatttgtcacttataccatttctcaattactcttatctttttcaataaaattaattaatgttatctattt 4122846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 4665875 - 4665962
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt 267  Q
    |||||||||||||||| ||| |||||||||||||| ||||| |||||||  |||||||||||| |||||  ||||||||| |||||||    
T  4665875 atttgtcaattataccatttatcaattactcttatatttttaaataaaactaattaatgctatatatttgaaaaactaaagtttgttt 4665962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 21527417 - 21527306
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg--tttttaaccaaag 277  Q
    |||||||||||| ||||||||||||||| ||| || ||||||| |||||  |||||||||| | |||||  ||||||||| ||||  ||||||| |||||    
T  21527417 atttgtcaattaaaccctttgtcaattattctaatatttttcattaaaactaattaatgctttatatttgaaaaactaaagtttgtttttttaaacaaag 21527318  T
Q  278 tttgtttctttt 289  Q
    ||||||| ||||    
T  21527317 tttgtttgtttt 21527306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 269
Target Start/End: Original strand, 34889064 - 34889147
Alignment:
Q  186 caattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||||| |||||| ||||||||||||||||||||||||||  ||||| || ||| |||||  |||| |||| |||||||||    
T  34889064 caattatactctttgttaattactcttatctttttcaataaaactaattattgttatatatttgaaaaattaaagtttgttttt 34889147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 23410480 - 23410597
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa--atttgtttttaaccaaag 277  Q
    ||||||||||||||| |||||  ||||||| |||||||||| |||||||  |||||||| ||| ||||| || | |||||   ||| ||||| | |||||    
T  23410480 atttgtcaattatactctttgcaaattacttttatcttttttaataaaactaattaatgttatatatttggatagctaaagttttttttttttaacaaag 23410579  T
Q  278 tttgtttctttttatctt 295  Q
    |||||||||| |||||||    
T  23410580 tttgtttcttgttatctt 23410597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 9353140 - 9353185
Alignment:
Q  203 aattactcttatctttttcaataaaatcaattaatgctatctattt 248  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||    
T  9353140 aattactcttatctttttcaataaaactaattaatgctatctattt 9353185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 26252718 - 26252669
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttc 221  Q
    ||||||| |||||||||||||||| |||||||||||||| ||||||||||    
T  26252718 aaggtacgatttgtcaattataccatttgtcaattactcgtatctttttc 26252669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 4184686 - 4184754
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctattt 248  Q
    ||||||||||||| |  ||| |||||||||||||| ||||| |||||||| |||||||||||| |||||    
T  4184686 atttgtcaattattctatttatcaattactcttatatttttaaataaaattaattaatgctatatattt 4184754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 21014315 - 21014231
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaa 258  Q
    ||||| |||||||||||||||||||| ||||| ||| |||| ||||||||| |||  || ||||  ||| |||||||||||||||    
T  21014315 ggtacgatttgtcaattataccctttctcaataacttttatttttttcaatcaaactaaataattatatttatttagaaaactaa 21014231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 26252659 - 26252595
Alignment:
Q  205 ttactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||||||||||| |||||||  |||||||||||| ||||| ||||| |||| |||||||||    
T  26252659 ttactcttatcttttttaataaaactaattaatgctatatatttggaaaaataaagtttgttttt 26252595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 7833532 - 7833578
Alignment:
Q  201 tcaattactcttatctttttcaataaaatcaattaatgctatctatt 247  Q
    |||||||||||||||||||| |||||||| ||||||| |||| ||||    
T  7833532 tcaattactcttatcttttttaataaaattaattaattctatttatt 7833578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 6396696 - 6396639
Alignment:
Q  182 ttgtcaattataccctttgtcaattactcttatct-ttttcaataaaatcaattaatg 238  Q
    |||||||||||||||||| | ||||| |||||||| ||||||||||||  ||||||||    
T  6396696 ttgtcaattataccctttcttaattattcttatcttttttcaataaaactaattaatg 6396639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 173 - 304
Target Start/End: Complemental strand, 54982853 - 54982716
Alignment:
Q  173 aggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg------tt 266  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||  || ||||||||||||||| |||||||||| ||||      ||    
T  54982853 aggtacaatttgtcaattatactctttgtcaattacttttatccttttcaataaaactaactaatgctatctatttggaaaactaaagtttggttttctt 54982754  T
Q  267 tttaaccaaagtttgtttctttttatcttcacatttat 304  Q
    ||||| ||||||||||||||| ||||||||| ||||||    
T  54982753 tttaaacaaagtttgtttcttgttatcttcaaatttat 54982716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 183 - 303
Target Start/End: Original strand, 50720899 - 50721023
Alignment:
Q  183 tgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg----tttttaaccaaagt 278  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||  ||||| ||| ||||    ||||||| ||||||    
T  50720899 tgtcaattataccatttgtcaattactcttatctttttcaataaaactaattaatgctatctatttgaaaaacaaaagtttgtttatttttaaacaaagt 50720998  T
Q  279 ttgtttctttttatcttcacattta 303  Q
    ||||||||| ||||||||| |||||    
T  50720999 ttgtttcttattatcttcaaattta 50721023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 292
Target Start/End: Complemental strand, 34032095 - 34031976
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt-aac 272  Q
    ||||| |||||||||||||||||||||| ||||| | ||||||||||||||||||  |||||||  |||||||||||||||||||| ||| ||||| |||    
T  34032095 ggtacgatttgtcaattataccctttgttaattagttttatctttttcaataaaactaattaatattatctatttagaaaactaaagtttttttttaaac 34031996  T
Q  273 caaagtttgtttctttttat 292  Q
     |||||||||||||| ||||    
T  34031995 aaaagtttgtttcttgttat 34031976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 37210082 - 37209987
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||  ||| |||||||||||||| |||||||||| |||||||||    
T  37210082 ggtataatttgtcaattataccctttgtcaattatttttatctttttcaataaaactaatcaatgctatctatttggaaaactaaagtttgttttt 37209987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 174 - 290
Target Start/End: Original strand, 46195737 - 46195855
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg--tttttaa 271  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||  |||||||| |||| ||||  |||| |||| ||||  |||||||    
T  46195737 ggtacaatttgtcaattataccctttgtcaattacttttatctttttcagtaaaactaattaatgttatcaatttgaaaaattaaagtttgtttttttaa 46195836  T
Q  272 ccaaagtttgtttcttttt 290  Q
     |||||||||||| |||||    
T  46195837 acaaagtttgtttgttttt 46195855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 9089712 - 9089580
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa---atttgttttta 270  Q
    ||||| |||| |||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||  |||| ||||    ||| ||||||    
T  9089712 ggtacgatttatcaattgtaccctttgtcaattactcttatctttttcaataaaactaattaatgctatctatttgaaaaattaaagcttttttttttta 9089613  T
Q  271 accaaagtttgtttctttttatcttcacattta 303  Q
    | ||| || |||||||| ||||||||| |||||    
T  9089612 aacaatgtatgtttcttgttatcttcaaattta 9089580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 269
Target Start/End: Original strand, 45666288 - 45666385
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||  ||||||||| ||||| |||| |||||||||    
T  45666288 aaggtacgatttgtcaattataccctttgtcaattacttttatctttttcaataaaacttattaataatatctatttggaaaattaaagtttgttttt 45666385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 23529505 - 23529609
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttt-tcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaac 272  Q
    ||||| |||||||||||||||| ||| ||||||||| ||||||||| |||||||||  |||||||||||| ||||| |||||||||||||||| |||||     
T  23529505 ggtacgatttgtcaattataccttttctcaattacttttatcttttttcaataaaactaattaatgctatttatttggaaaactaaaatttgtctttaaa 23529604  T
Q  273 caaag 277  Q
    |||||    
T  23529605 caaag 23529609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 25490453 - 25490548
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||||  |||||||| ||| ||||| |||||||||| |||||||||    
T  25490453 ggtaaaatttgttaattataccatttgtcaattactcttatcattttcaataaaaataattaatgttatatatttggaaaactaaagtttgttttt 25490548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 6949088 - 6949154
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctat 246  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  6949088 atttgtcaattataccatttgtcaattactcttatctttttcaataaaactaattaatgctatctat 6949154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 24074203 - 24074135
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctattt 248  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||| |||||||||    
T  24074203 atttgtcaattataccctttgtcaattactcttaactttttcaataaaactaattaatgttatctattt 24074135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 45635550 - 45635415
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa------atttgttt 267  Q
    ||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||  |||||||| ||| ||||| ||||||||||      |||| |||    
T  45635550 ggtacgatttatcaattataccatttgtcaattactcttatatttttcaataaaactaattaatgttatatatttggaaaactaaagtttttattttttt 45635451  T
Q  268 ttaaccaaagtttgtttctttttatcttcacattta 303  Q
    | || |||| |||||||||| ||||||||| |||||    
T  45635450 taaaacaaaatttgtttcttgttatcttcaaattta 45635415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 24538396 - 24538286
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg-tttttaaccaaagt 278  Q
    |||||||||||| | ||||||||||||| |||||| |||||||||||||  ||||| || ||| ||||| |||||||||| |||| ||||||| ||||||    
T  24538396 atttgtcaattacaacctttgtcaattattcttatatttttcaataaaactaattagtgttatatatttggaaaactaaagtttgttttttaaacaaagt 24538297  T
Q  279 ttgtttctttt 289  Q
    |||||| ||||    
T  24538296 ttgtttgtttt 24538286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 303
Target Start/End: Original strand, 33889622 - 33889723
Alignment:
Q  204 attactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt--aaccaaagtttgtttctttttatcttcacatt 301  Q
    ||||||||||||||||| |||||||  |||||||||||| ||||| |||||||||||||| |||||  || |||| |||||||||| ||||||||| |||    
T  33889622 attactcttatcttttttaataaaactaattaatgctatatatttggaaaactaaaatttttttttaaaaacaaaatttgtttcttgttatcttcagatt 33889721  T
Q  302 ta 303  Q
    ||    
T  33889722 ta 33889723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 38840514 - 38840378
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg-------tt 266  Q
    |||| ||||||||||||||| |||||| |||||||| |||||||||| | |||||  ||||||||||||||||||  ||||||||| ||||       ||    
T  38840514 ggtagaatttgtcaattatatcctttgacaattacttttatcttttttagtaaaactaattaatgctatctatttgaaaaactaaagtttgtttgttatt 38840415  T
Q  267 tttaaccaaagtttgtttctttttatcttcacattta 303  Q
    || || ||||||||||||||| ||||||||| |||||    
T  38840414 ttaaaacaaagtttgtttcttgttatcttcaaattta 38840378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 25493839 - 25493912
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttta 270  Q
    |||| |||||||||||||||||||||||||||  |||||||| ||||||||| |||||||||| ||||||||||    
T  25493839 tttgacaattactcttatctttttcaataaaactaattaatgttatctatttggaaaactaaagtttgttttta 25493912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 38045403 - 38045484
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaac 255  Q
    ||||| |||| ||||||||||||||| |||||||||||||| | |||||||||||  |||||||||||||||||| ||||||    
T  38045403 ggtacgatttatcaattataccctttatcaattactcttatatctttcaataaaagtaattaatgctatctatttggaaaac 38045484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 38434335 - 38434219
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaa 271  Q
    |||||| ||||| ||||||||||||||| ||||||| |||||| |||||||||||||  ||||| |||||| |||||  ||||||||| ||| |||||||    
T  38434335 aaggtataatttatcaattataccctttatcaattattcttatatttttcaataaaactaattagtgctatatatttgaaaaactaaagttt-tttttaa 38434237  T
Q  272 ccaaagtttgtttctttt 289  Q
      ||||||||||| ||||    
T  38434236 agaaagtttgtttgtttt 38434219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 19443661 - 19443572
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||||||||||||||||||||||||| |||||||||| | |||||  || |||| ||||||||||  |||| |||| |||||||||    
T  19443661 atttgtcaattataccctttgtcaattacttttatcttttttagtaaaactaagtaatactatctatttgaaaaattaaagtttgttttt 19443572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 20782459 - 20782543
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaa 258  Q
    |||| ||||| |||||||||| |||| |||||||||||||| |||||||||||||  ||| ||||||| ||||||| ||||||||    
T  20782459 ggtataatttttcaattatacactttctcaattactcttatatttttcaataaaactaataaatgctacctatttaaaaaactaa 20782543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 37371496 - 37371408
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||| ||||||||||||||||||||||| |||||| ||||||||||||| | ||||||| ||| |||||  ||||| ||| |||||||||    
T  37371496 atttatcaattataccctttgtcaattattcttatatttttcaataaaa-ctattaatgatatatatttgaaaaaccaaagtttgttttt 37371408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 2684687 - 2684758
Alignment:
Q  194 ccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtt 266  Q
    |||||| | |||||||||||||||||||||||||| | || |||||||||||||| |||||||||| ||||||    
T  2684687 ccctttcttaattactcttatctttttcaataaaa-cgataaatgctatctatttggaaaactaaagtttgtt 2684758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 47944516 - 47944430
Alignment:
Q  211 ttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt---aaccaaagtttgtttctttttatct 294  Q
    ||||||||||||||||||   ||||||||||||||||||||||| |||| |||||||||   || |||| ||||| |||||||||||    
T  47944516 ttatctttttcaataaaacttattaatgctatctatttagaaaattaaagtttgtttttttaaaacaaaatttgtgtctttttatct 47944430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 303
Target Start/End: Original strand, 2492863 - 2492967
Alignment:
Q  203 aattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt----aaccaaagtttgtttctttttatcttcac 298  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||  ||||||||| ||| |||||    || |||| ||||||| || |||||||||     
T  2492863 aattactcttatcttttttaataaaactaattaatgctatctatttgaaaaactaaagtttatttttttaaaaacaaaatttgttttttgttatcttcaa 2492962  T
Q  299 attta 303  Q
    |||||    
T  2492963 attta 2492967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 302
Target Start/End: Complemental strand, 668094 - 667994
Alignment:
Q  205 ttactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt---aaccaaagtttgtttctttttatcttcacatt 301  Q
    |||||||||||||||| |||||||  |||||||| ||| ||||| |||||||||| |||||||||   || |||| |||||||||| || |||||| |||    
T  668094 ttactcttatctttttaaataaaactaattaatgttatatatttggaaaactaaagtttgtttttttaaaacaaaatttgtttcttgttgtcttcagatt 667995  T
Q  302 t 302  Q
    |    
T  667994 t 667994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 668148 - 668104
Alignment:
Q  177 acaatttgtcaattataccctttgtcaattactcttatctttttc 221  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||    
T  668148 acaatttctcaattataccctttgtcaattactcatatctttttc 668104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 21956576 - 21956484
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtt 266  Q
    ||||| |||||||| ||||| | ||| |||| |||||||||||||||||||||||  |||||||  || ||||||  ||||||||| ||||||    
T  21956576 ggtacgatttgtcacttatatcttttctcaaatactcttatctttttcaataaaactaattaatattacctatttgaaaaactaaagtttgtt 21956484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 30913531 - 30913618
Alignment:
Q  181 tttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||| ||||||||||||| ||||||||| |||| |||||||||||||  |||||| | ||| ||||| |||||||||| ||| |||||    
T  30913531 tttgtgaattataccctttatcaattact-ttatgtttttcaataaaactaattaacgttatatatttcgaaaactaaagttttttttt 30913618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 290
Target Start/End: Complemental strand, 49299953 - 49299844
Alignment:
Q  180 atttgtcaattataccctttgtcaattactctta-tctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaaccaaagt 278  Q
    |||||||||||||||||||||| ||||||| ||| | |||||||||| ||  ||| |||| |||||||||  ||||||| | ||  ||||||| ||||||    
T  49299953 atttgtcaattataccctttgttaattacttttattttttttcaatataactaatcaatgttatctatttgaaaaactacagtt--tttttaaacaaagt 49299856  T
Q  279 ttgtttcttttt 290  Q
    |||||| |||||    
T  49299855 ttgtttgttttt 49299844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 28130487 - 28130578
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaa 271  Q
    |||||||||||||| | ||| | ||||||||||||| |||| |||||||| | |||||| ||| || || |||| ||||| |||||||||||    
T  28130487 atttgtcaattataacattttttaattactcttatcctttttaataaaattagttaatgttatgtacttggaaatctaaagtttgtttttaa 28130578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 49263014 - 49263061
Alignment:
Q  201 tcaattactcttatctttttcaataaaatcaattaatgctatctattt 248  Q
    ||||||||||||||||||||||||||||  |||||||| |||||||||    
T  49263014 tcaattactcttatctttttcaataaaactaattaatgatatctattt 49263061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 292
Target Start/End: Complemental strand, 38044996 - 38044900
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt--aaccaaagtttgtttctttttat 292  Q
    |||||||||| ||||||| |||||||||||||| |||||||  ||||||||| | |||||||| ||| |||||  || ||||||||| || |||||||    
T  38044996 tttgtcaatttctcttatatttttcaataaaattaattaatattatctattt-ggaaactaaagttttttttttaaaacaaagtttgcttatttttat 38044900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 21342301 - 21342253
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaa 228  Q
    |||| ||||||||| | ||||| ||||||||||||||||||||||||||    
T  21342301 atttatcaattatatcatttgttaattactcttatctttttcaataaaa 21342253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 41502560 - 41502624
Alignment:
Q  205 ttactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||||||||||| |||||||| |||||||| ||| |||||  ||||||||| ||| |||||    
T  41502560 ttactcttatcttttttaataaaattaattaatgttatatatttgaaaaactaaagttttttttt 41502624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 33808885 - 33808959
Alignment:
Q  195 cctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||| |||||||||||  |||||||||||||| |||||||| ||| |||||  |||| | ||| ||||||||    
T  33808885 cctttgttaattactcttacatttttcaataaaattaattaatgttatatatttgaaaaattgaaaattgttttt 33808959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 1821655 - 1821567
Alignment:
Q  205 ttactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt--aaccaaagtttgtttcttttta 291  Q
    ||||| ||| |||||||| |||||  |||||||| ||||||||| ||||| |||| ||| |||||  || |||||||||||| ||||||    
T  1821655 ttacttttacctttttcagtaaaactaattaatgatatctatttggaaaattaaagtttatttttttaaacaaagtttgttttttttta 1821567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 269
Target Start/End: Complemental strand, 27650924 - 27650830
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactc---ttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||| |||| ||||||||| | ||||||||||||||   ||||| ||||||||||||  |||||||| |||    ||| |||||||||||||||||||    
T  27650924 gtacgatttatcaattatatcatttgtcaattactcttattatcattttcaataaaactaattaatgttat---attaaaaaactaaaatttgttttt 27650830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 29961604 - 29961512
Alignment:
Q  179 aatttgtcaattataccctttgtcaattactctta-----tctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtt 266  Q
    |||||||||||||||  |||| |||||||||||||     |||||||||||||||  ||| ||| ||||||||||  |||||  |||||||||    
T  29961604 aatttgtcaattatattctttatcaattactcttacctcctctttttcaataaaactaataaatactatctatttgaaaaacccaaatttgtt 29961512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 2273609 - 2273481
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt--ttaac 272  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||   ||||||||||| ||||| |||||||||| |||||||  | ||     
T  2273609 gtacaatttgtcaattatacgctttgtcaattactcttatctttttcaataaaacttattaatgctatatatttggaaaactaaagtttgttttatgaaa 2273510  T
Q  273 caaagtttgtttctttttatcttcacatt 301  Q
    |||||||||||||||  |||||| |||||    
T  2273509 caaagtttgtttcttaatatcttaacatt 2273481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 180 - 303
Target Start/End: Original strand, 4567311 - 4567435
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtt-tttaaccaaagt 278  Q
    ||||||| ||||||||||||||||| |||| ||||||||||||||||||  ||||||||||||||| || |||||||||| ||| || ||||| ||||||    
T  4567311 atttgtcgattataccctttgtcaactacttttatctttttcaataaaactaattaatgctatctagttggaaaactaaagttttttctttaaacaaagt 4567410  T
Q  279 ttgtttctttttatcttcacattta 303  Q
    ||||||||| ||||||||| |||||    
T  4567411 ttgtttcttcttatcttcaaattta 4567435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 37124163 - 37124248
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa 259  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||| ||||||| ||||||||||    
T  37124163 ggtacaatttgtcaattataccctttgtaaattactcttatctttttcaataaaactaattaatgctctctatttggaaaactaaa 37124248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 35793202 - 35793074
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt-----aacca 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | ||||||| |||||||||  ||| |||||     || ||    
T  35793202 atttgtcaattataccctttgtcaattactcttatctttttcaataaaactaattaatgttgtctatttggaaaactaatgttttttttttcttaaaaca 35793103  T
Q  275 aagtttgtttctttttatcttcacattta 303  Q
    ||||||||||||| ||||||||| |||||    
T  35793102 aagtttgtttcttgttatcttcaaattta 35793074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 179 - 303
Target Start/End: Original strand, 16196780 - 16196906
Alignment:
Q  179 aatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt---ttaaccaa 275  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| ||| |||||| || |||||||||| |||||||   |||| |||    
T  16196780 aatttgtcaattataccctttgtca-ttactcttatctttttcaataaaactaattgatgttatctaattggaaaactaaagtttgtttttattaaacaa 16196878  T
Q  276 agtttgtttctttttatcttcacattta 303  Q
    |||||||||||| || |||||| |||||    
T  16196879 agtttgtttcttgttttcttcaaattta 16196906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 303
Target Start/End: Complemental strand, 10535104 - 10534975
Alignment:
Q  176 tacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt--aacc 273  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||  ||||||||  ||||||||  |||| |||| ||| |||||  || |    
T  10535104 tacaatttgtcaattataccttttgtcaattcctcttatctttttcaataaaactaattaatgtaatctatttgaaaaattaaagttttttttttaaaac 10535005  T
Q  274 aaagtttgtttctttttatcttcacattta 303  Q
    | |||||||||||| ||||||||| |||||    
T  10535004 atagtttgtttcttgttatcttcaaattta 10534975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 174 - 289
Target Start/End: Original strand, 15643324 - 15643442
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa---atttgttttta 270  Q
    ||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||  |||||||||||| ||||| ||||||||||    ||| ||||||    
T  15643324 ggtacgatttctcaattataccctttatcaattactcttatttttttcaataaaactaattaatgctatatatttggaaaactaaagttttttattttta 15643423  T
Q  271 accaaagtttgtttctttt 289  Q
    | |||||||||||| ||||    
T  15643424 aacaaagtttgtttgtttt 15643442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 176 - 295
Target Start/End: Complemental strand, 39599786 - 39599667
Alignment:
Q  176 tacaatttgtcaattataccctttgtcaattactcttatct-ttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaacca 274  Q
    |||||||  ||||||||||||||| |||||||||||||||| ||||| ||||||  |||||||||||| |||||  ||||||||| ||| ||||||| ||    
T  39599786 tacaattgttcaattataccctttatcaattactcttatcttttttcgataaaactaattaatgctatatatttgaaaaactaaagttt-tttttaaaca 39599688  T
Q  275 aagtttgtttctttttatctt 295  Q
    |||||||||| ||||||||||    
T  39599687 aagtttgtttgtttttatctt 39599667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 28226544 - 28226661
Alignment:
Q  181 tttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgt---ttttaaccaaag 277  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||  |||||||| ||| |||||  ||||||||| ||| |   |||| | |||||    
T  28226544 tttgtcaattataccttttgtcaattgctcttatctttttcaataaaactaattaatgttatatatttgaaaaactaaagtttttttatttttaacaaag 28226643  T
Q  278 tttgtttctttttatctt 295  Q
    |||||||||| |||||||    
T  28226644 tttgtttcttgttatctt 28226661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 3835762 - 3835645
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg---ttttta 270  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||||||||  ||  |||||||  ||||||||| |||||||||| ||||   ||||||    
T  3835762 ggtacgatttgtcaattataccctctgtcaatcactcttatctttttcaat--aactaattaatattatctatttggaaaactaaagtttgtttttttta 3835665  T
Q  271 accaaagtttgtttcttttt 290  Q
    | |||||||||||| |||||    
T  3835664 aacaaagtttgtttgttttt 3835645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 289
Target Start/End: Complemental strand, 24394323 - 24394206
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg--tttttaa 271  Q
    ||||| |||| |||||||||||||||||||| ||||||||| ||||| |||||||  || ||||| ||| ||||| |||||||||| ||||  |||||||    
T  24394323 ggtacgatttatcaattataccctttgtcaactactcttatatttttgaataaaactaactaatgatatatatttggaaaactaaagtttgtatttttaa 24394224  T
Q  272 ccaaagtttgtttctttt 289  Q
     |||||||||||| ||||    
T  24394223 acaaagtttgtttgtttt 24394206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 295
Target Start/End: Complemental strand, 36412933 - 36412812
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt-aac 272  Q
    |||||||||| |||||||||||||||||  |||||||||||||||||||| ||||  |||||||| |||  ||||  ||||||||| ||| ||||| ||     
T  36412933 ggtacaatttatcaattataccctttgtttattactcttatctttttcaa-aaaactaattaatgttataaatttgaaaaactaaagtttttttttaaaa 36412835  T
Q  273 caaagtttgtttctttttatctt 295  Q
    ||||||||||||||| |||||||    
T  36412834 caaagtttgtttcttgttatctt 36412812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 290
Target Start/End: Original strand, 43368776 - 43368889
Alignment:
Q  176 tacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaaccaa 275  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||| |||||||  |||||| | ||| ||||| |||||||||| ||| |||| || |||    
T  43368776 tacactttgtcaatcataccctttgtcaattacttttatctttttaaataaaactaattaaagttatatatttggaaaactaaagttt-ttttaaaacaa 43368874  T
Q  276 agtttgtttcttttt 290  Q
    ||||||||| |||||    
T  43368875 agtttgtttgttttt 43368889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 39430693 - 39430582
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt--ttaaccaaag 277  Q
    ||||| ||||||||| |||||||||||| |||||| |||||||||||||  ||||| |||||| |||||  ||||||||| |||||||  |||| |||||    
T  39430693 atttgacaattatactctttgtcaattattcttatatttttcaataaaactaattagtgctatatatttgaaaaactaaagtttgttttattaaacaaag 39430594  T
Q  278 tttgtttctttt 289  Q
    ||||||| ||||    
T  39430593 tttgtttgtttt 39430582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 280
Target Start/End: Original strand, 2798601 - 2798702
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg--tttttaaccaaag 277  Q
    ||||||| |||||||| | ||||||||||||||||||||||||||||||  |||||||||||| |||||  ||||||||| ||||  ||||||| |||||    
T  2798601 atttgtcgattatacc-tctgtcaattactcttatctttttcaataaaactaattaatgctatatatttgaaaaactaaagtttgtatttttaaacaaag 2798699  T
Q  278 ttt 280  Q
    |||    
T  2798700 ttt 2798702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 39617533 - 39617624
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||| |||||||| ||||||| ||||||||||||| ||||||||||||||||||| ||||||||     ||||| |||||||||| |||||||||    
T  39617533 ggtacgatttgtcagttataccttttgtcaattacttttatctttttcaataaaattaattaatg----ttatttggaaaactaaagtttgttttt 39617624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 4963028 - 4962941
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt 267  Q
    |||| ||||||||||| ||||||||||| |||||| |||||||||||||  ||||| |||||| |||||  ||||||||| |||||||    
T  4963028 atttatcaattataccttttgtcaattattcttatatttttcaataaaactaattagtgctatatatttgaaaaactaaagtttgttt 4962941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 290
Target Start/End: Original strand, 27723280 - 27723397
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt--ttaac 272  Q
    |||| |||||||| |||||| |||||| ||||||| |||||||||||| |||||  |||||||||||||| |||  |||| |||| |||||||  ||||     
T  27723280 gtacgatttgtcacttatactctttgttaattacttttatctttttcagtaaaactaattaatgctatctgtttgaaaaattaaagtttgttttattaaa 27723379  T
Q  273 caaagtttgtttcttttt 290  Q
    ||||||||| || |||||    
T  27723380 caaagtttgctttttttt 27723397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 7809287 - 7809198
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||||||||||| ||| ||||||||| |||||||||| |||||||  ||||||| |||| ||||  |||||||||| ||| |||||    
T  7809287 atttgtcaattataccatttctcaattacttttatctttttaaataaaactaattaatactatgtattaggaaaactaaagtttattttt 7809198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 293
Target Start/End: Complemental strand, 2271958 - 2271879
Alignment:
Q  215 ctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt-ttaaccaaagtttgtttctttttatc 293  Q
    |||| ||||| |||| |||||||||||||||||| |||||||||| ||| ||| |||| ||||||||||||||| |||||    
T  2271958 ctttgtcaattaaattaattaatgctatctatttggaaaactaaagtttatttattaaacaaagtttgtttcttgttatc 2271879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 8614926 - 8614796
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa---atttgttttta 270  Q
    ||||| |||| |||||||||||||| ||||||||||||||| ||||| |||||||  ||||| || |||||||||  |||||||||    ||| |||| |    
T  8614926 ggtacgatttttcaattataccctt-gtcaattactcttat-ttttttaataaaactaattattgttatctatttgaaaaactaaatgttttttttttaa 8614829  T
Q  271 accaaagtttgtttctttttatcttcacattta 303  Q
    | |||| |||||||||| ||||||||| |||||    
T  8614828 aacaaaatttgtttcttgttatcttcaaattta 8614796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 1752670 - 1752593
Alignment:
Q  189 ttataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtt 266  Q
    ||||| |||||  |||||||| |||||||||||||| |||  |||||||  |||||||||||||||||||| ||||||    
T  1752670 ttataacctttcacaattacttttatctttttcaatcaaactaattaatattatctatttagaaaactaaagtttgtt 1752593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 14771501 - 14771456
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaata 225  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||    
T  14771501 atttgtcaattataccctttgtcaattattcttatatttttcaata 14771456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 15221953 - 15221908
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaata 225  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||    
T  15221953 atttgtcaattataccctttgtcaattattcttatatttttcaata 15221908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 39427421 - 39427486
Alignment:
Q  205 ttactcttatctttttcaataaaa-tcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||||||||||| ||||||| | |||||||||||| ||||| |||||||||| |||||||||    
T  39427421 ttactcttatcttttttaataaaactaaattaatgctatatatttggaaaactaaagtttgttttt 39427486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 47541757 - 47541800
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttatctttt 219  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  47541757 gtacaatttgtcaattatacccttt-tcaattactcttatctttt 47541800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 39247381 - 39247325
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaat 237  Q
    ||||||||||| ||||||||||| ||||||||||| |||||||||||||  |||||||    
T  39247381 atttgtcaattgtaccctttgtccattactcttat-tttttcaataaaactaattaat 39247325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 39427370 - 39427411
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttc 221  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  39427370 atttgtcaattatactctttgtcaattactcgtatctttttc 39427411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 14735151 - 14735061
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtt 266  Q
    ||||| |||||||| ||||||  ||| | |||||||||||||||||||||||||| | | ||||| |||| |||| |||||||||| ||||||    
T  14735151 ggtacgatttgtcatttatactatttcttaattactcttatctttttcaataaaa-ctaataatgttatcaattt-gaaaactaaagtttgtt 14735061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 269
Target Start/End: Complemental strand, 37072467 - 37072387
Alignment:
Q  186 caattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||||||||||  |||||||||||||||||||||||||||   |  ||| | ||||||||| ||||||||| |||||||||    
T  37072467 caattatacccttt--caattactcttatctttttcaataaaacttacaaattccatctattta-aaaactaaagtttgttttt 37072387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 44550026 - 44550094
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctattt 248  Q
    |||||||| || |||| ||| |||||||||||||||||||||| |||||  ||||||||  ||||||||    
T  44550026 atttgtcacttgtaccatttctcaattactcttatctttttcattaaaactaattaatgacatctattt 44550094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 25290615 - 25290702
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt 267  Q
    |||| ||||||||| | ||||||||||| |||||| |||||||||||||  ||||||||   | |||||  ||||||||| |||||||    
T  25290615 atttatcaattatatcttttgtcaattattcttatatttttcaataaaactaattaatgtcgtatatttgaaaaactaaagtttgttt 25290702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 2271980 - 2271947
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaatta 207  Q
    ||||| ||||||||||||||||||||||||||||    
T  2271980 ggtacgatttgtcaattataccctttgtcaatta 2271947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 10026291 - 10026250
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatg 238  Q
    ||||| ||||||||||||||||||||||||||  ||||||||    
T  10026291 tttgttaattactcttatctttttcaataaaactaattaatg 10026250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 27229675 - 27229608
Alignment:
Q  220 tcaataaaatcaattaatgctatctatttagaaaactaaaatttg---tttttaaccaaagtttgttt 284  Q
    |||||||||  ||||||||||||| |||| |||||||||| ||||   ||||||| ||||||||||||    
T  27229675 tcaataaaactaattaatgctatcaatttggaaaactaaagtttgttatttttaaacaaagtttgttt 27229608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 12436829 - 12436700
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaacc 273  Q
    |||||||||| |||||||||| ||||||||||||||||||| |||||||||||||  ||||||||||||||||||  ||||||| | ||| ||||||| |    
T  12436829 ggtacaatttatcaattatacgctttgtcaattactcttatatttttcaataaaactaattaatgctatctatttgaaaaactacagtttttttttaaac 12436730  T
Q  274 aaagtttgtttctttttatcttcacattta 303  Q
    ||| || ||||||| ||||||||| |||||    
T  12436729 aaaattcgtttcttgttatcttcaaattta 12436700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 297
Target Start/End: Original strand, 1583450 - 1583575
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt---a 270  Q
    ||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||  |||||||||||||||||| |||||||||| ||| |||||   |    
T  1583450 ggtacgatttgtcaattatactctttgtcaat-actcttgtctttttcaataaaactaattaatgctatctatttggaaaactaaagtttttttttttaa 1583548  T
Q  271 accaaagtttgtttctttttatcttca 297  Q
    | |||||||||||| || |||||||||    
T  1583549 aacaaagtttgttttttgttatcttca 1583575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 180 - 280
Target Start/End: Original strand, 17201223 - 17201322
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaaccaaagtt 279  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||| ||| ||| ||| |||||||    
T  17201223 atttgtcaattatatcatttgtcaattactcttatctttttcaataaaactaattaatgctatctatttggaaaactaaagttt-tttctaaacaaagtt 17201321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 11992316 - 11992219
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||| |||||||||||||||  | ||||||||||| |||||||||||| |||||| |||||||||||| ||||| |||||||||| |||||||||    
T  11992316 aaggtacgatttgtcaattatacaatctgtcaattacttttatctttttcagtaaaattaattaatgctatttatttggaaaactaaagtttgttttt 11992219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 17202918 - 17202829
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||||  |||||||| ||||||||| |||||||||| |||||||||    
T  17202918 atttttcaattataccctttgtcaattacttttatctttatcaataaaactaattaatgttatctatttggaaaactaaagtttgttttt 17202829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 174 - 297
Target Start/End: Complemental strand, 8544828 - 8544707
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaacc 273  Q
    ||||| |||||||||||||| | | ||||||||||||||||||||||||||||||  |||||| | ||| ||||| |||||||| |  || ||||||| |    
T  8544828 ggtacgatttgtcaattatatcatctgtcaattactcttatctttttcaataaaactaattaacgttatttatttggaaaactaca--ttttttttaaac 8544731  T
Q  274 aaagtttgtttctttttatcttca 297  Q
    |||||||||||||| |||||||||    
T  8544730 aaagtttgtttcttgttatcttca 8544707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 36246381 - 36246289
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtt 266  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||  ||| ||| |||||| ||| |||||||||| ||||||    
T  36246381 ggtacgatttgtcacttataccctttctcaattactcttatctttttcaataaaactaatgaatactatctgtttggaaaactaaagtttgtt 36246289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 303
Target Start/End: Original strand, 19931833 - 19931957
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt--aaccaaag 277  Q
    |||||||| ||||||  ||||||||||| ||||||||||||||||||||  |||| ||| ||| ||||| |||||||||| |||||||||  || ||||     
T  19931833 atttgtcagttatactatttgtcaattattcttatctttttcaataaaactaattcatgttatatattt-gaaaactaaagtttgttttttaaaacaaaa 19931931  T
Q  278 tttgtttctttttatcttcacattta 303  Q
    |||||||||| ||||||||| |||||    
T  19931932 tttgtttcttgttatcttcaaattta 19931957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 289
Target Start/End: Original strand, 32474168 - 32474284
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg--tttttaa 271  Q
    ||||| ||||| |||||||||||||| |||||||||| | | |||||||||||||  |||||||||||||||||| ||||| |||| ||||  |||||||    
T  32474168 ggtacgatttgccaattataccctttatcaattactcattt-tttttcaataaaactaattaatgctatctatttggaaaattaaagtttgtttttttaa 32474266  T
Q  272 ccaaagtttgtttctttt 289  Q
     |||||||| ||||||||    
T  32474267 acaaagtttttttctttt 32474284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 303
Target Start/End: Original strand, 39614829 - 39614960
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg--------tttttaa 271  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||  |||||||||||| |||||  |||| |||| ||||        |||||||    
T  39614829 atttgtcaattatatcctttgttaattactcttatctttttcaacaaaactaattaatgctatatatttgaaaaattaaagtttgtttgtttttttttaa 39614928  T
Q  272 ccaaagtttgtttctttttatcttcacattta 303  Q
     ||||||||||||||| ||||||||| |||||    
T  39614929 acaaagtttgtttcttattatcttcaaattta 39614960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 303
Target Start/End: Original strand, 19924893 - 19925008
Alignment:
Q  189 ttataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt--aaccaaagtttgtttct 286  Q
    ||||||| ||||||||||| ||||||||||||||||||||  |||| ||| ||| ||||| |||||||||| |||||||||  || |||| |||||||||    
T  19924893 ttataccatttgtcaattattcttatctttttcaataaaactaattcatgttatatattt-gaaaactaaagtttgttttttaaaacaaaatttgtttct 19924991  T
Q  287 ttttatcttcacattta 303  Q
    | ||||||||| |||||    
T  19924992 tgttatcttcaaattta 19925008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 32718073 - 32717984
Alignment:
Q  179 aatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttt 268  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||| |||  |||||||||||| |||||  ||||||||| ||||||||    
T  32718073 aatttgtcaattataccctttgtcagttattcttatatttttcaattaaactaattaatgctatatatttgaaaaactaaagtttgtttt 32717984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 28619980 - 28620035
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaat 229  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28619980 ggtacgatttgtcaattacaccctttgtcaattactcttatctttttcaataaaat 28620035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 36437438 - 36437312
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaa-tcaattaatgctatctatttagaaaactaaaatttgtttttaacc 273  Q
    |||| |||| ||||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||||| ||| |||    ||| ||| || |||| |    
T  36437438 gtacgatttttcaattatatcctttatcaattactcttatctttttcaataaaactaaattaatgctatctctttggaa---caaagttttttattaaac 36437342  T
Q  274 aaagtttgtttctttttatcttcacattta 303  Q
    |||||||||||||  ||||||||| |||||    
T  36437341 aaagtttgtttctcattatcttcaaattta 36437312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 19803649 - 19803703
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaa 228  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19803649 ggtacgatttgtcaattataccctttgtcaattacttttatctttttcaataaaa 19803703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 14654941 - 14655013
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||||||| |||||| |||||||||||||  |||||||||||| ||||| |||||||||| |||||||||    
T  14654941 tttgtcaattattcttatatttttcaataaaactaattaatgctatatatttggaaaactaaagtttgttttt 14655013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 266
Target Start/End: Complemental strand, 39940404 - 39940312
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttat-ctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtt 266  Q
    ||||||||| ||||||||||| ||||||||| ||||||||  ||||| |||||||  |||||||||||||||||| || ||||||| ||||||    
T  39940404 gtacaatttatcaattataccttttgtcaataactcttatatttttttaataaaactaattaatgctatctatttggataactaaattttgtt 39940312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 1590163 - 1590233
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt 267  Q
    |||||||||||||||||||||||| |||||||  |||||||||||| |||||  ||||||||| |||||||    
T  1590163 tttgtcaattactcttatcttttttaataaaactaattaatgctatatatttgaaaaactaaagtttgttt 1590233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 20201623 - 20201722
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaa----ttactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||| ||||||||||||||||||||||||||    ||||| |||| |||||||||||||  |||||||| ||| ||||| |||||||||| ||| |||||    
T  20201623 ggtataatttgtcaattataccctttgtcaatttcttacttttatatttttcaataaaactaattaatgttatatatttggaaaactaaagtttattttt 20201722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 19922151 - 19922258
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt--aaccaaagtttgtttctttttatct 294  Q
    ||||||| ||| ||||||||||||||||||||  |||| ||| ||| ||||| |||||||||| |||||||||  || |||| |||||||||| ||||||    
T  19922151 tttgtcagttattcttatctttttcaataaaactaattcatgttatatattt-gaaaactaaagtttgttttttaaaacaaaatttgtttcttgttatct 19922249  T
Q  295 tcacattta 303  Q
    ||| |||||    
T  19922250 tcaaattta 19922258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 16365728 - 16365815
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttt 268  Q
    |||||||||||||||  ||||||||||| |||||| |||||||||||||  ||||| |||||| ||||| | |||||||| ||||||||    
T  16365728 atttgtcaattatactttttgtcaattattcttatatttttcaataaaactaattagtgctatatattt-ggaaactaaagtttgtttt 16365815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 42674185 - 42674141
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatcttt 218  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  42674185 ggtacaatttgtcaatgataccctttgtcaattactcttatcttt 42674141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 18552604 - 18552520
Alignment:
Q  179 aatttgtcaattataccctttgtcaattactcttatcttttt----caataaaatcaattaatgctatctatttagaaaactaaa 259  Q
    ||||||||| |||||||||||  ||||||||||||| |||||    ||||||||  |||||||| ||||||||||||||||||||    
T  18552604 aatttgtcacttatacccttttgcaattactcttattttttttcttcaataaaactaattaatgatatctatttagaaaactaaa 18552520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 43346737 - 43346638
Alignment:
Q  205 ttactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa-atttgtttttaaccaaagtttgtttctttttatcttcacattta 303  Q
    |||||||||||||||| |||||||  || ||||||||| ||||||||||||||||  ||| |||||||  ||| |||||||||| |||||| || |||||    
T  43346737 ttactcttatcttttttaataaaactaagtaatgctatatatttagaaaactaaagttttttttttaaataaaatttgtttcttgttatctacaaattta 43346638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 17591643 - 17591728
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtt 266  Q
    |||||||| ||||||| ||| | |||||||||||||||||||||||||| | | ||||| |||| |||| |||||||||| ||||||    
T  17591643 atttgtcatttataccatttcttaattactcttatctttttcaataaaa-ctaataatgttatcaatttggaaaactaaagtttgtt 17591728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 17557953 - 17557998
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaata 225  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||    
T  17557953 atttgtcaattataccctttgtcaattattcttatatttttcaata 17557998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 18413426 - 18413332
Alignment:
Q  210 cttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt--aaccaaagtttgtttctttttatcttcacattta 303  Q
    |||||||||||||||||| | ||||||||||| |||||| |||||||| | ||| |||||  || || |||||||||||| ||||||||| |||||    
T  18413426 cttatctttttcaataaatt-aattaatgctagctatttggaaaactacagtttatttttttaaacacagtttgtttcttgttatcttcaaattta 18413332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 14543734 - 14543805
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactctta-tctttttcaataaaatcaattaatgctat 242  Q
    |||||||||||| ||||||||||||||| |||||||||| || || ||||||||||||  ||||||| ||||    
T  14543734 aaggtacaatttttcaattataccctttctcaattactcatactcattttcaataaaactaattaatcctat 14543805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 291
Target Start/End: Original strand, 39584818 - 39584934
Alignment:
Q  179 aatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg----tttttaacca 274  Q
    ||||||||||||| || |||| | | ||| ||||||||||||| |||||| ||||||||  ||| ||||| |||||||||| ||||    ||| |||  |    
T  39584818 aatttgtcaattaaactctttcttagttattcttatctttttcgataaaaccaattaatcttatgtatttggaaaactaaagtttgaatttttctaaata 39584917  T
Q  275 aagtttgtttcttttta 291  Q
    |||||||||||||||||    
T  39584918 aagtttgtttcttttta 39584934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 39585847 - 39585773
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttt--tcaataaaatcaattaatgctatctatttagaa 252  Q
    ||||||| |||| | ||||||||||||  |||||||||||  |||||||||  ||||||||||||||||||||||    
T  39585847 atttgtcgattacatcctttgtcaattgttcttatcttttattcaataaaactaattaatgctatctatttagaa 39585773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 249658 - 249617
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttc 221  Q
    ||||||||||||||||||||||||||||||| || |||||||    
T  249658 atttgtcaattataccctttgtcaattactcataactttttc 249617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 249607 - 249543
Alignment:
Q  205 ttactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||| ||||||||| |||||||  |||||||||||| ||||| |||||||||| ||| |||||    
T  249607 ttactcctatcttttttaataaaactaattaatgctatatatttggaaaactaaagtttattttt 249543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 13220126 - 13220058
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctattt 248  Q
    |||||| ||||||| | |||||||| |||| |||||||||| |||||||  |||| |||||||||||||    
T  13220126 atttgttaattatatcttttgtcaactacttttatcttttttaataaaactaattcatgctatctattt 13220058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 36060286 - 36060247
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttat 214  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  36060286 gtacgatttgtcgattataccctttgtcaattactcttat 36060247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 14967142 - 14967184
Alignment:
Q  214 tctttttcaataaaatcaattaatgctatctatttagaaaact 256  Q
    |||||||||||||||  |||||||| |||||||||||||||||    
T  14967142 tctttttcaataaaactaattaatgttatctatttagaaaact 14967184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 36194105 - 36194044
Alignment:
Q  187 aattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctattt 248  Q
    ||||||||| ||| |||| ||||||||||||||| ||| |||  |||||||| |||||||||    
T  36194105 aattataccatttttcaagtactcttatctttttgaatcaaactaattaatgttatctattt 36194044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 37269450 - 37269486
Alignment:
Q  185 tcaattataccctttgtcaattactcttatctttttc 221  Q
    |||||||||||||||||||||||||  ||||||||||    
T  37269450 tcaattataccctttgtcaattactggtatctttttc 37269486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 303
Target Start/End: Original strand, 32233625 - 32233752
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgc-tatctatttagaaaactaaa---atttgtttttaaccaa 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| ||| ||||||    ||| ||||||| |||    
T  32233625 atttgtcaattataccctttgtcaattactcttatctttttcaataaaactaattaatgcttatctatttggaacactaaagttttttttttttaaacaa 32233724  T
Q  276 agtttgtttctttttatcttcacattta 303  Q
    ||||||||| || ||||||||| |||||    
T  32233725 agtttgtttattgttatcttcaaattta 32233752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 34146174 - 34146269
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||| | ||||||| |||||||||| |||||||||    
T  34146174 ggtacgatttgtcaattatactctttgtcaattactcttatctttttcaataaaactaattaatgatgtctatttggaaaactaaagtttgttttt 34146269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 25400467 - 25400586
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgt----ttttaaccaa 275  Q
    |||| ||||||||||||||||| ||||||| ||||| ||||||||||||  |||||||||||||||||| |||||||||| |||||    |||||| |||    
T  25400467 atttatcaattataccctttgttaattacttttatccttttcaataaaactaattaatgctatctatttggaaaactaaagtttgttttattttaagcaa 25400566  T
Q  276 agtttgtttctttttatctt 295  Q
    |||||||||||| |||||||    
T  25400567 agtttgtttcttattatctt 25400586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 25496646 - 25496765
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgt----ttttaaccaa 275  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||||||||||  ||||||||| |||||    |||||| |||    
T  25496646 atttatcaattataccctttgttaattacttttatctttttcaataaaactaattaatgctatctatttgaaaaactaaagtttgttttattttaagcaa 25496745  T
Q  276 agtttgtttctttttatctt 295  Q
    |||||||||||| |||||||    
T  25496746 agtttgtttcttattatctt 25496765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 172 - 295
Target Start/End: Original strand, 27231762 - 27231892
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg------- 264  Q
    ||||||| |||| |||||||||| |||||| ||||| |||||| |||||||||||||  |||||||||||||||||| |||||||||| ||||           
T  27231762 aaggtacgatttatcaattatactctttgttaattattcttatttttttcaataaaactaattaatgctatctatttggaaaactaaagtttgttcgttc 27231861  T
Q  265 tttttaaccaaagtttgtttctttttatctt 295  Q
    ||||||| ||||||||||||||| |||||||    
T  27231862 tttttaaacaaagtttgtttcttgttatctt 27231892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 183 - 289
Target Start/End: Complemental strand, 7578292 - 7578183
Alignment:
Q  183 tgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg---tttttaaccaaagtt 279  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||  |||||||||||| |||||| |||| |||| ||||   ||||||| |||||||    
T  7578292 tgtcaattataccctttgtcaattattcttatatttttcaataaaactaattaatgctatatatttaaaaaattaaagtttgttttttttaaacaaagtt 7578193  T
Q  280 tgtttctttt 289  Q
    ||||| ||||    
T  7578192 tgtttgtttt 7578183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 297
Target Start/End: Complemental strand, 1530688 - 1530564
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa-atttgtttttaac 272  Q
    ||||| |||||||||||||||  |||||||||||||||||| |||||||||||||   |||||||||||||||||  ||| |||||  ||| |||||||     
T  1530688 ggtacgatttgtcaattatacattttgtcaattactcttatttttttcaataaaactgattaatgctatctatttgaaaacctaaagttttttttttaat 1530589  T
Q  273 caaagtttgtttctttttatcttca 297  Q
    ||||| ||||||||| || ||||||    
T  1530588 caaagcttgtttcttgttttcttca 1530564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 39628384 - 39628288
Alignment:
Q  174 ggtacaatttgtcaattataccctttg-tcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||| |||||||||||||||| |||  |||||||||||||| |||||||||||||  |||||||| ||||||||| |||||||||| |||||||||    
T  39628384 ggtacgatttgtcaattatacctttttatcaattactcttatttttttcaataaaactaattaatgttatctatttggaaaactaaagtttgttttt 39628288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 39637934 - 39637838
Alignment:
Q  174 ggtacaatttgtcaattataccctttg-tcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||| |||||||||||||||| |||  |||||||||||||| |||||||||||||  |||||||| ||||||||| |||||||||| |||||||||    
T  39637934 ggtacgatttgtcaattatacctttttatcaattactcttatttttttcaataaaactaattaatgttatctatttggaaaactaaagtttgttttt 39637838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 292
Target Start/End: Original strand, 40557204 - 40557319
Alignment:
Q  176 tacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaaccaa 275  Q
    |||||||| |||||||||||||||||  |||||||||||||||||||||||| | |||||||| |||  ||||  ||||||||| ||| |||| || |||    
T  40557204 tacaatttatcaattataccctttgttgattactcttatctttttcaataaact-aattaatgttataaatttgaaaaactaaagttttttttaaaacaa 40557302  T
Q  276 agtttgtttctttttat 292  Q
    |||||||||||| ||||    
T  40557303 agtttgtttcttgttat 40557319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 179 - 297
Target Start/End: Original strand, 38401562 - 38401683
Alignment:
Q  179 aatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaat---ttgtttttaaccaa 275  Q
    |||||||||||||||   |||||||||||||||||||||||| |||||||| |||||||| ||| ||||| ||||| |||| |   || ||||||| |||    
T  38401562 aatttgtcaattatattatttgtcaattactcttatcttttttaataaaattaattaatgttatttatttcgaaaattaaagtttattttttttaaacaa 38401661  T
Q  276 agtttgtttctttttatcttca 297  Q
    || ||||||||| |||||||||    
T  38401662 agattgtttcttgttatcttca 38401683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 1256816 - 1256688
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatt------tgtttttaacc 273  Q
    ||||||||||||| |||||||||||||||||||||| |||| |||||||| ||||||||  |||||||||||||| |||| ||      | ||||||| |    
T  1256816 atttgtcaattatgccctttgtcaattactcttatc-ttttaaataaaattaattaatgtcatctatttagaaaattaaagtttatttctttttttaaac 1256718  T
Q  274 aaagtttgtttctttttatcttcacattta 303  Q
    |||||||||||||| | ||||||| |||||    
T  1256717 aaagtttgtttcttgtaatcttcaaattta 1256688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 16599473 - 16599353
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaat---ttgtttt 268  Q
    |||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||||  |||||||| ||| |||||  ||||||||| |   || ||||    
T  16599473 aaggtataatttgtcagttataccatttatcaattactcttatctttttcaataaaactaattaatgatatatatttgtaaaactaaagtttattttttt 16599374  T
Q  269 taaccaaagtttgtttctttt 289  Q
    ||| |||||||||||| ||||    
T  16599373 taaacaaagtttgtttttttt 16599353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 14896626 - 14896715
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||||||  |||||||| ||| |||||| |||||| || |||||||||    
T  14896626 atttgtcaaatatatcatttgtcaattactcttatctttttcaataaaactaattaatgttatatatttaaaaaacttaagtttgttttt 14896715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 16393718 - 16393828
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg----tttttaaccaaagtttgtttctttttat 292  Q
    ||||||||||||| ||| ||||||||||||||  |||||||||||||||||| |||||||||| ||||    ||||||| |||||||| ||| || ||||    
T  16393718 tttgtcaattacttttagctttttcaataaaactaattaatgctatctatttggaaaactaaagtttggttttttttaaacaaagtttattttttgttat 16393817  T
Q  293 cttcacattta 303  Q
    ||||| |||||    
T  16393818 cttcaaattta 16393828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 7695388 - 7695293
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||| |||||||||||||| | ||| | ||||||||||||||||||||||||||  | |||||| |||||||||  |||||||||| ||||||||    
T  7695388 ggtacgatttgtcaattatatcattttttaattactcttatctttttcaataaaactagttaatgttatctatttgaaaaactaaaaattgttttt 7695293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 4418567 - 4418655
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||||||||||| ||||||||||||| || |||||||| |||||||  |||||||||||| ||||| |||||||||| || ||||||    
T  4418567 atttgtcaattatactctttgtcaattaccctcatcttttt-aataaaactaattaatgctatatatttggaaaactaaagttagttttt 4418655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 38457289 - 38457357
Alignment:
Q  201 tcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||| | ||||||||||||||||||  |||||||||||||||||| |||||||||| |||||||||    
T  38457289 tcaattatttttatctttttcaataaaactaattaatgctatctatttggaaaactaaagtttgttttt 38457357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 295
Target Start/End: Complemental strand, 41411555 - 41411436
Alignment:
Q  176 tacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt-aacca 274  Q
    |||||||| |||||||||||||||||  |||||||||||||||||||| ||||  |||||| | |||  ||||  ||||||||| ||| ||||| || ||    
T  41411555 tacaatttatcaattataccctttgttgattactcttatctttttcaa-aaaactaattaaagttataaatttgaaaaactaaagtttttttttaaaaca 41411457  T
Q  275 aagtttgtttctttttatctt 295  Q
    ||||||||||||| |||||||    
T  41411456 aagtttgtttcttgttatctt 41411436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 289
Target Start/End: Complemental strand, 3443816 - 3443706
Alignment:
Q  181 tttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg--tttttaaccaaagt 278  Q
    |||||||||||||||| ||| |||||  |||||| ||||||||| |||  |||||||||||| |||||  ||||||||| ||||  ||||||| ||||||    
T  3443816 tttgtcaattatacccgttgacaattgttcttatttttttcaatcaaactaattaatgctatatatttgaaaaactaaagtttgtttttttaaacaaagt 3443717  T
Q  279 ttgtttctttt 289  Q
    |||||| ||||    
T  3443716 ttgtttgtttt 3443706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 9455236 - 9455318
Alignment:
Q  185 tcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt 267  Q
    ||||||||||| ||||||||||| |||||| |||||||||||||  |||||||||||| |||||  |||| |||| |||||||    
T  9455236 tcaattataccatttgtcaattattcttatatttttcaataaaactaattaatgctatatatttgaaaaaataaagtttgttt 9455318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 30887958 - 30887895
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatg 238  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||| |||||||  ||||||||    
T  30887958 ggtagaatttgtcaattatacc-tttgtcaattactcttatcttttttaataaaactaattaatg 30887895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 303
Target Start/End: Complemental strand, 29315934 - 29315832
Alignment:
Q  204 attactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt---aaccaaagtttgtttctttttatcttcacat 300  Q
    ||||||||||||||||| |||||||  || ||||||||| ||||| |||||||||| ||| |||||   || |||| |||||||||| |||||| || ||    
T  29315934 attactcttatcttttttaataaaactaagtaatgctatatatttggaaaactaaagtttttttttttaaaacaaaatttgtttcttgttatctacagat 29315835  T
Q  301 tta 303  Q
    |||    
T  29315834 tta 29315832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 3741656 - 3741711
Alignment:
Q  204 attactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa 259  Q
    ||||||||||||||||| |||||||  |||||||||||| ||||| ||||||||||    
T  3741656 attactcttatcttttttaataaaactaattaatgctatatatttggaaaactaaa 3741711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 295
Target Start/End: Original strand, 34038905 - 34039006
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg---tttttaaccaaagtttgtttctttttatc 293  Q
    |||||||||||   ||||||||||||||||||  | |||||| ||| |||||| |||| |||| ||||   ||||||| ||||||||||||||| |||||    
T  34038905 tttgtcaattatatttatctttttcaataaaaatagttaatgttatatatttaaaaaattaaagtttgttttttttaaacaaagtttgtttcttgttatc 34039004  T
Q  294 tt 295  Q
    ||    
T  34039005 tt 34039006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 1358998 - 1358940
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatg 238  Q
    ||||||||||||| |||||| ||||||||||| |||||||||| |||||  ||||||||    
T  1358998 atttgtcaattatgccctttatcaattactctaatctttttcattaaaactaattaatg 1358940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 5870769 - 5870831
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa 259  Q
    ||||||||||| ||||||| ||||||||||||  |||||||| |||||||||  |||||||||    
T  5870769 tttgtcaattattcttatcattttcaataaaactaattaatgttatctatttgaaaaactaaa 5870831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 44666272 - 44666214
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatg 238  Q
    |||| ||| ||||||||||| |||||| |||||||||||||||||||||  ||||||||    
T  44666272 atttctcacttataccctttctcaatttctcttatctttttcaataaaactaattaatg 44666214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 45083091 - 45083025
Alignment:
Q  203 aattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||||||||||||||||||||||  ||||||||  || ||||| |||||||||  |||||||||    
T  45083091 aattactcttatctttttcaataaaactaattaatgtaatgtatttggaaaactaacgtttgttttt 45083025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 2743008 - 2742936
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||||||| | |||| |||||||||||||  |||||||||||| |||||  |||| |||| |||||||||    
T  2743008 tttgtcaattatttttatatttttcaataaaactaattaatgctatatatttgaaaaattaaagtttgttttt 2742936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 29315989 - 29315946
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttatcttt 218  Q
    |||| |||| |||||||||||||||||||||||||| |||||||    
T  29315989 gtacgatttttcaattataccctttgtcaattactcgtatcttt 29315946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 3741601 - 3741647
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttatctttttc 221  Q
    |||| |||||||||||||||| ||||||| |||||| ||||||||||    
T  3741601 gtacgatttgtcaattataccatttgtcagttactcgtatctttttc 3741647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 11087124 - 11087181
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaat 237  Q
    ||||||||||||||   |||  ||||||||||||||||| |||||||||| |||||||    
T  11087124 atttgtcaattataaattttaccaattactcttatctttctcaataaaattaattaat 11087181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 4418974 - 4418914
Alignment:
Q  179 aatttgtcaattataccctttgtcaattactctta-tctttttcaataaaatcaattaatg 238  Q
    ||||||||| | ||| ||||||||||||||||||| | |||||||||||||  ||||||||    
T  4418974 aatttgtcagtcatatcctttgtcaattactcttattttttttcaataaaactaattaatg 4418914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 39140448 - 39140400
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaa 228  Q
    ||||| |||| |||| |||| ||||||| ||||||||||||||||||||    
T  39140448 atttgccaataatactctttctcaattaatcttatctttttcaataaaa 39140400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 25842024 - 25841913
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgt--ttttaaccaaag 277  Q
    |||||||||| ||||||||||||||||| |||||| |||||||||||||  |||||||||||| ||||| ||||||||||||||||  |||||| |||||    
T  25842024 atttgtcaatcataccctttgtcaattaatcttatatttttcaataaaactaattaatgctatatatttggaaaactaaaatttgtttttttaaacaaag 25841925  T
Q  278 tttgtttctttt 289  Q
    ||||||| ||||    
T  25841924 tttgtttgtttt 25841913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 172 - 267
Target Start/End: Original strand, 45646587 - 45646682
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt 267  Q
    ||||||| |||||||||||||||||||||||||||||| || |||||||||||||||  ||||||||||||||||||  ||||||||| |||||||    
T  45646587 aaggtacgatttgtcaattataccctttgtcaattacttttttctttttcaataaaactaattaatgctatctatttgaaaaactaaagtttgttt 45646682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 37031057 - 37030937
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaaccaaagtt 279  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||||||||  |||||||||||||||||| ||| ||   | ||| ||||||| |||||||    
T  37031057 atttgtcaattataccctttgccaattacttttagctttttcaataaaactaattaatgctatctatttggaacac---agtttttttttaaacaaagtt 37030961  T
Q  280 tgtttctttttatcttcacattta 303  Q
    |||||||| ||||||||| |||||    
T  37030960 tgtttcttgttatcttcaaattta 37030937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 287
Target Start/End: Original strand, 19578321 - 19578438
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt---- 269  Q
    ||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||  |||||||| ||| |||||||||||| ||| |||||||||        
T  19578321 ggtacgatttgtcaattataccctttgtcaattgctcttgtctttttcaataaaactaattaatgttatatatttagaaaacaaaagtttgtttttttta 19578420  T
Q  270 aaccaaagtttgtttctt 287  Q
    || |||||||||||||||    
T  19578421 aaacaaagtttgtttctt 19578438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 174 - 295
Target Start/End: Original strand, 20841310 - 20841430
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaat-ttgtttttaac 272  Q
    ||||| |||||||||||||||| |||||||||||||  ||| |||||||||||||  ||||||||||||||||||  ||||||||| | || |||||||     
T  20841310 ggtacgatttgtcaattataccatttgtcaattact--tatttttttcaataaaactaattaatgctatctatttgaaaaactaaagtattttttttaaa 20841407  T
Q  273 caaagtttgtttctttttatctt 295  Q
    ||||||||||||||| |||||||    
T  20841408 caaagtttgtttcttattatctt 20841430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 45760043 - 45759956
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt 267  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||  ||||||||  |||||||    
T  45760043 atttgtcaattataccctttgtcaattactcttatctttctcaataaaactaattaatgctatctatttgaaaaactaatgtttgttt 45759956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 174 - 303
Target Start/End: Original strand, 5493542 - 5493678
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt---- 269  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||  ||||||||  ||| |||||        
T  5493542 ggtacgatttgtcaattataccctttgtcaattactcttatctttttcaataaaactaattaatgttgtctatttgaaaaactaattttttttttttttt 5493641  T
Q  270 ---aaccaaagtttgtttctttttatcttcacattta 303  Q
       || ||||||||||||||| ||||||||| |||||    
T  5493642 taaaaacaaagtttgtttcttattatcttcaaattta 5493678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 291
Target Start/End: Complemental strand, 20141098 - 20140988
Alignment:
Q  182 ttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt-ttaaccaaagttt 280  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||  |||||||| ||| |||||| |||| |||| ||| ||| |||| ||||||||    
T  20141098 ttgtcaattataccttttctcaattactcttatctttttcaataaaacaaattaatgttatgtatttaaaaaattaaagtttttttcttaaacaaagttt 20140999  T
Q  281 gtttcttttta 291  Q
    |||||||||||    
T  20140998 gtttcttttta 20140988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 291
Target Start/End: Original strand, 23272051 - 23272161
Alignment:
Q  182 ttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt-ttaaccaaagttt 280  Q
    |||||||||||||  ||| ||||||| ||||||||||||||||||||  |||||||||||| |||||| |||| |||||||| ||| |||| ||||||||    
T  23272051 ttgtcaattatacattttctcaattattcttatctttttcaataaaacaaattaatgctatatatttaaaaaattaaaatttttttcttaaacaaagttt 23272150  T
Q  281 gtttcttttta 291  Q
    |||||||||||    
T  23272151 gtttcttttta 23272161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 27264108 - 27264182
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaa 254  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  27264108 atttgtcaattataccatttgtcaattactcttatctttttcaataaaattaattaatgctatctttttggaaaa 27264182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 2093771 - 2093860
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||||||||||||||||||||||||| |||||||||||| | |||| ||||||||||||||||||  ||||||||| ||| |||||    
T  2093771 atttgtcaattataccctttgtcaattacttttatctttttcagtcaaattaattaatgctatctatttgaaaaactaaagttttttttt 2093860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 19234081 - 19234007
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaa 254  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||| |||||    
T  19234081 atttttcaattataccctttgtcaattactcttatctttttcaataaaaaaaattaatgctatatatttggaaaa 19234007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 269
Target Start/End: Original strand, 34668672 - 34668766
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||| |||||||||||||||||||||||||||||| || | ||||| |||||||  |||||||||||||||||| |||||||||| | |||||||    
T  34668672 gtacgatttgtcaattataccctttgtcaattacttttttttttttgaataaaactaattaatgctatctatttggaaaactaaagtatgttttt 34668766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 284
Target Start/End: Complemental strand, 2440740 - 2440637
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaaccaaagtt 279  Q
    |||||||||||||||||||||||||||| | ||||||||| ||||||||| |||||||  ||| |||||  ||||||||| ||| ||||||| |||||||    
T  2440740 atttgtcaattataccctttgtcaattagttttatctttt-caataaaattaattaattatatatatttgaaaaactaaagtttttttttaaacaaagtt 2440642  T
Q  280 tgttt 284  Q
    |||||    
T  2440641 tgttt 2440637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 176 - 295
Target Start/End: Complemental strand, 54675275 - 54675157
Alignment:
Q  176 tacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaaccaa 275  Q
    |||||||| |||||||||||||||||  |||||||||||||||||||| ||||  |||||||| |||  ||||  ||||||||| ||| |||| || |||    
T  54675275 tacaatttatcaattataccctttgttgattactcttatctttttcaa-aaaactaattaatgttataaatttgaaaaactaaagttttttttaaaacaa 54675177  T
Q  276 agtttgtttctttttatctt 295  Q
    |||||||||||| |||||||    
T  54675176 agtttgtttcttgttatctt 54675157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 9588740 - 9588852
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg---tttttaaccaaa 276  Q
    |||| |||||||||||||||||||||||||  |||||||||||| ||||  |||||||| ||| ||||| |||||||||| ||||   ||||||| ||||    
T  9588740 atttatcaattataccctttgtcaattactaatatctttttcaaaaaaactaattaatgttatatatttggaaaactaaagtttgttttttttaaacaaa 9588839  T
Q  277 gtttgtttctttt 289  Q
    |||||||| ||||    
T  9588840 gtttgtttgtttt 9588852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 375741 - 375859
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgc--tatctatttagaaaactaaaatttg---tttttaacca 274  Q
    |||||| ||||||| | |||||||||||||||||||||||| |||||||| |||||||||  ||| ||||| ||||| |||| ||||   ||||||| ||    
T  375741 atttgttaattatatcttttgtcaattactcttatcttttttaataaaattaattaatgctttatatatttggaaaattaaattttgttttttttaaaca 375840  T
Q  275 aagtttgtttctttttatc 293  Q
    ||||||||||||| |||||    
T  375841 aagtttgtttcttgttatc 375859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 25342476 - 25342380
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||| |||| |||||||  |||||||| ||| ||||| ||||||| ||||||||||||    
T  25342476 aaggtacgatttgtcaattatatcctttgtcaattacttttatcgtttttaataaaactaattaatgttatatatttggaaaact-aaatttgttttt 25342380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 45667468 - 45667540
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||    
T  45667468 tttgtcaattactttgatctttttcaataaaattaattaatgctatctatttggaaaacgaaagtttgttttt 45667540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 296429 - 296519
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatc-tttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||| ||||||||||||||||||||||||||| |||||| ||||||  |||| ||||||| ||||| |||||||||| ||| |||||    
T  296429 atttgtcagttataccctttgtcaattactcttatcttttttctataaaactaatttatgctatatatttggaaaactaaagtttattttt 296519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 633379 - 633286
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttt 268  Q
    |||| ||||| |||||| | ||||||||||||||||||||| ||||||||||||  |||||||| ||| ||||| |||||||||| ||| ||||    
T  633379 gtacgatttgacaattacatcctttgtcaattactcttatcattttcaataaaactaattaatgttatatatttggaaaactaaagtttatttt 633286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 1272421 - 1272489
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctattt 248  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||||||  |||||||||||| |||||    
T  1272421 atttttcaactataccctttgtcaattactcttatatttttcaataaaactaattaatgctatatattt 1272489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 290
Target Start/End: Original strand, 27817404 - 27817524
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttg---tttt 268  Q
    |||||||  ||||||||||||||| ||||||||||| | ||||||||||||||||||  ||| ||| || |||||||  ||||||||| ||||   ||||    
T  27817404 aaggtacggtttgtcaattataccttttgtcaattatt-ttatctttttcaataaaactaatgaattctctctatttgaaaaactaaagtttgttttttt 27817502  T
Q  269 taaccaaagtttgtttcttttt 290  Q
    ||| |||||||||||| |||||    
T  27817503 taaacaaagtttgtttgttttt 27817524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 1405214 - 1405284
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctat 242  Q
    |||||||||||||||||||||||| ||||||||||||||| || ||||| ||||| |  ||||||||||||    
T  1405214 aaggtacaatttgtcaattataccatttgtcaattactctaatatttttaaataacactaattaatgctat 1405284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 21934548 - 21934484
Alignment:
Q  205 ttactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||||||||||| |||||||  |||||||||||| ||||| |||||||||| |||||||||    
T  21934548 ttactcttatcttttttaataaaactaattaatgctatatatttggaaaactaaagtttgttttt 21934484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 7259778 - 7259718
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaacta 257  Q
    ||||||||||| |||||| |||||||||||||  |||||||||||| ||||| ||||||||    
T  7259778 tttgtcaattattcttatatttttcaataaaactaattaatgctatatatttggaaaacta 7259718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 29556600 - 29556544
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaa 228  Q
    |||||| ||||| ||||||||||  ||| ||||||||||||||||||||||||||||    
T  29556600 aaggtataatttatcaattatacaatttctcaattactcttatctttttcaataaaa 29556544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 303
Target Start/End: Complemental strand, 16237661 - 16237554
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaa-aatttgtttttaaccaaagtttgtttctttttatctt 295  Q
    ||||||||||||| |||| ||||||||||||   |||||||||||||||||| ||||| |||   ||| ||||||| |||||||| ||| || | |||||    
T  16237661 tttgtcaattactattatatttttcaataaagctaattaatgctatctatttggaaaattaattttttttttttaaacaaagttttttttttgtaatctt 16237562  T
Q  296 cacattta 303  Q
    || |||||    
T  16237561 caaattta 16237554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 19187756 - 19187668
Alignment:
Q  179 aatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttt 267  Q
    ||||||| |||||||| || |||| ||||| ||||| |||||||||||||  |||||||| ||| |||||  |||| |||| |||||||    
T  19187756 aatttgtaaattatactctgtgtcgattacacttatttttttcaataaaactaattaatgatatatatttgaaaaattaaagtttgttt 19187668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 44940932 - 44940831
Alignment:
Q  205 ttactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt---aaccaaagtttgtttctttttatcttcacatt 301  Q
    ||||| |||||||||| |||||||  |||||||||||| |||||  |||| |||| |||||||||   || |||| |||||||||| |||| |||| |||    
T  44940932 ttacttttatcttttttaataaaactaattaatgctatatatttgaaaaattaaagtttgtttttttaaaacaaaatttgtttcttgttattttcagatt 44940833  T
Q  302 ta 303  Q
    ||    
T  44940832 ta 44940831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 44940989 - 44940942
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttc 221  Q
    ||||| |||| ||||||||||||||| |||||||||| ||||||||||    
T  44940989 ggtacgatttttcaattataccctttatcaattactcgtatctttttc 44940942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 10614595 - 10614653
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatg 238  Q
    |||||||| || |||| ||| |||||||||||||||||||||| |||||  ||||||||    
T  10614595 atttgtcacttgtaccatttctcaattactcttatctttttcattaaaactaattaatg 10614653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 297
Target Start/End: Original strand, 256736 - 256859
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa-atttgtttttaacc 273  Q
    |||| |||||||||||||||| |||||||||| |||||||||||||||||||||  |||||||| ||||||||| ||||||||||  ||| |||||||      
T  256736 gtaccatttgtcaattataccatttgtcaatttctcttatctttttcaataaaactaattaatgttatctatttggaaaactaaagttttttttttaaat 256835  T
Q  274 aaagtttgtttctttttatcttca 297  Q
    | || ||||||||| |||||||||    
T  256836 ataggttgtttcttgttatcttca 256859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 272473 - 272419
Alignment:
Q  174 ggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaa 228  Q
    |||||||||| ||||||||| ||| |||||||||| ||||| |||||||||||||    
T  272473 ggtacaatttatcaattataacctctgtcaattacacttatatttttcaataaaa 272419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 180 - 303
Target Start/End: Original strand, 382 - 504
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaaccaaagtt 279  Q
    |||| ||||| ||||||||||||||||| ||||||  ||||||||||||  |||||||| ||| ||||| |||||||||| |||||||| || |||| ||    
T  382 atttttcaatcataccctttgtcaattattcttataattttcaataaaactaattaatgttatatattt-gaaaactaaagtttgttttaaaacaaaatt 480  T
Q  280 tgtttctttttatcttcacattta 303  Q
    |||||||| | ||||||| |||||    
T  481 tgtttcttgtcatcttcaaattta 504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 269
Target Start/End: Original strand, 860 - 957
Alignment:
Q  172 aaggtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    ||||||| |||||||||||||||| ||| ||||||||| |||||||||||||| |||  |||| |||||||||| || ||||| |||| |||||||||    
T  860 aaggtacgatttgtcaattataccttttctcaattacttttatctttttcaatgaaactaattgatgctatctagttggaaaattaaagtttgttttt 957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 303
Target Start/End: Complemental strand, 46650 - 46545
Alignment:
Q  197 tttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgtttttaaccaaagtttgtttctttttatcttc 296  Q
    ||||||||||| ||||||  ||||||||||||| |||||||||||| ||||| ||||| |||| |||||||| || |||| |||||||||| | ||||||    
T  46650 tttgtcaattattcttataattttcaataaaattaattaatgctatatattt-gaaaattaaagtttgttttaaaacaaaatttgtttcttgtcatcttc 46552  T
Q  297 acattta 303  Q
    | |||||    
T  46551 aaattta 46545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 14916 - 15004
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaaatttgttttt 269  Q
    |||||||||||||||| |||||||||||| || ||| ||||||||||||  |||||||| ||| ||||| |||||||||| || ||||||    
T  14916 atttgtcaattataccttttgtcaattaccctcatc-ttttcaataaaactaattaatgttatatatttggaaaactaaagttagttttt 15004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 15339 - 15277
Alignment:
Q  175 gtacaatttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatg 238  Q
    ||||||||||||||| ||| |||| ||||| ||||||||| |||||||||||||  ||||||||    
T  15339 gtacaatttgtcaatcatatcctt-gtcaactactcttatttttttcaataaaactaattaatg 15277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 6482 - 6403
Alignment:
Q  180 atttgtcaattataccctttgtcaattactcttatctttttcaataaaatcaattaatgctatctatttagaaaactaaa 259  Q
    |||| ||||||||| |||||||||||||||  ||| |||||||||||||| ||||| || ||| ||||| ||||||||||    
T  6482 atttatcaattatatcctttgtcaattacttctatgtttttcaataaaattaattattgttatatatttggaaaactaaa 6403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 1242 - 1301
Alignment:
Q  231 aattaatgctatctatttagaaaactaaaatttg---tttttaaccaaagtttgtttctt 287  Q
    |||||||||||| ||||| |||||||||| ||||   ||||||| |||||||||||||||    
T  1242 aattaatgctatttatttggaaaactaaagtttgttttttttaaacaaagtttgtttctt 1301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University