View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19768_high_1 (Length: 683)
Name: NF19768_high_1
Description: NF19768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19768_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 18 - 672
Target Start/End: Original strand, 35106266 - 35106920
Alignment:
| Q |
18 |
cttagaaattatattatggcatcagatgtttttgtatttttgagacatgcatatggattaacacctgtaatttttgcttgatatagtagttgtacctttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35106266 |
cttagaaattatattatggcatcagatgtttttgtatttttgagacatacatatggattaacacctgtaatttttgcttgatatagtagttgtacctttt |
35106365 |
T |
|
| Q |
118 |
taattaaatccatgctatatttctagtctaggcatgatggcaagtggagcaatcaatgtggtaagaggctcaaggtcatcagttgaagagttattgcaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35106366 |
taattaaatccatgctatatttctagtctaggcatgatggcaagtggagcaatcaatgtggtaagaggctcaaggtcatcagttgaagagttattgcaaa |
35106465 |
T |
|
| Q |
218 |
tatacaaccactctgaaaggttttggaaatgcctcaattcatagctagtcttaattggcacatccatattgtatggctaagattgtgtgttataactgct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35106466 |
tatacaaccactctgaaaggttttggaaatgcctcaattcatagctagtcttaattggcacatccatattgtatgactaagattgtgtgttataactgct |
35106565 |
T |
|
| Q |
318 |
aacaattctcaacaaattgttcattatatgttaaccttttgttttggcaatctttgttaatgctcaatcttcattggtgacttcagtgttgcactagccg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35106566 |
aacaattctcaacaaattgttcattatatgttaaccttttgttttggcaatcattgttaatgctcaatcttcattggtgacttcagtgttgcactagccg |
35106665 |
T |
|
| Q |
418 |
tggatggccctgaaatgtttatccgaattgcaaaaccattctattcaaagactggcatgagatttattattttgctttggggagaaaaatcagacctgaa |
517 |
Q |
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| T |
35106666 |
tggatggccctgaaatgtttaaccgaattgcaaaaccattctattcaaagactggcatgagatttattattttgctttggggagaaaaatcagacctgaa |
35106765 |
T |
|
| Q |
518 |
tctgatcgctgaagaaaataaggaggtcccaatctttagtttcatggaagtcatagatttgggacgagagagtcgcatggcattgtctgattctcatgaa |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35106766 |
tctgatcgctgaagaaaataaggaggtcccaatctttagtttcatggaagtcatagatttgggacgagagagtcgcatggcattgtctgattctcatgaa |
35106865 |
T |
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| Q |
618 |
gctagtaagtcgacttttttctcttcaaactcgggttatattatacttaagaatt |
672 |
Q |
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| T |
35106866 |
gctagtaagtcgacttttttctcttcaaactcgggttatattatacttaagaatt |
35106920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 38122011 - 38121916
Alignment:
| Q |
141 |
tagtctaggcatgatggcaagtggagcaatcaatgtggtaagaggctcaaggtcatcagttgaagagttattgcaaatatacaaccactctgaaag |
236 |
Q |
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| T |
38122011 |
tagtctaggcatgatggcaattggagcaatcaatgtggttaggggttcaaggtcatcaattgaagaactactgcaaatatacaaccactctgaaag |
38121916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 38135305 - 38135206
Alignment:
| Q |
141 |
tagtctaggcatgatggcaagtggagcaatcaatgtggtaagaggctcaaggtcatcagttgaagagttattgcaaatatacaaccactctgaaaggttt |
240 |
Q |
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||||||||| |||||||||| |||||||||||||| || || || |||||||||||| ||||||| | ||||||||||||||||||||||||||||| |
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| T |
38135305 |
tagtctaggtatgatggcaaccggagcaatcaatgttgttaggggttcaaggtcatcaattgaagaactgctgcaaatatacaaccactctgaaaggttt |
38135206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 509
Target Start/End: Complemental strand, 38121917 - 38121810
Alignment:
| Q |
402 |
agtgttgcactagccgtggatggccctgaaatgtttatccgaattgcaaaaccattctattcaaagactggcatgagatttattattttgctttggggag |
501 |
Q |
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|||||||||||||| ||||| |||||||||| || | |||||||||||||| |||| ||||| || |||||||||||| |||||||||||| |
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| T |
38121917 |
agtgttgcactagctgtggacaatcctgaaatgtataatcagattgcaaaaccattttatttgaagacctcaatcagatttattattctgctttggggag |
38121818 |
T |
|
| Q |
502 |
aaaaatca |
509 |
Q |
| |
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|||||||| |
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| T |
38121817 |
aaaaatca |
38121810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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