View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19768_high_14 (Length: 247)
Name: NF19768_high_14
Description: NF19768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19768_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 40207664 - 40207876
Alignment:
| Q |
18 |
gaaccggtaattaagtattgtcttttattttgtttgcatactcgacccaaattctaatatgtttcttgaaaaacacaggaactgtttggactgcaagtgc |
117 |
Q |
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| T |
40207664 |
gaaccggtaattaagtattgacttttattttgtttgcatactcgacccaaattctaatatgtttcttgaaaaacacaggaactgtttggactgcaagtgc |
40207763 |
T |
|
| Q |
118 |
acatgtaataacagctgtggtagggtctggagttctgtctctagcttgggctattgctcaactcggatggattgctggtcctattgttatgattctcttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40207764 |
acatgtaataacagctgtggtagggtctggagttctgtctctagcttgggctattgctcaactcggatggattgctggtcctattgtcatgattctcttt |
40207863 |
T |
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| Q |
218 |
gcttgggttactt |
230 |
Q |
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||||||||||||| |
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| T |
40207864 |
gcttgggttactt |
40207876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 65 - 230
Target Start/End: Original strand, 40203555 - 40203720
Alignment:
| Q |
65 |
caaattctaatatgtttcttgaaaaacacaggaactgtttggactgcaagtgcacatgtaataacagctgtggtagggtctggagttctgtctctagctt |
164 |
Q |
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| T |
40203555 |
caaattctaatatgtttcttgaaaaacacaggaactgcttggactgcaagtgcacatgtaataacagctgtgatagggtctggagtgctgtctctagctt |
40203654 |
T |
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| Q |
165 |
gggctattgctcaactcggatggattgctggtcctattgttatgattctctttgcttgggttactt |
230 |
Q |
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| T |
40203655 |
gggctattgctcaacttggatggattgctggtcctattgttatgattctctttgcttgggttactt |
40203720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 57 - 230
Target Start/End: Original strand, 40199384 - 40199557
Alignment:
| Q |
57 |
actcgacccaaattctaatatgtttcttgaaaaacacaggaactgtttggactgcaagtgcacatgtaataacagctgtggtagggtctggagttctgtc |
156 |
Q |
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|||||||||||||| ||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40199384 |
actcgacccaaattttaataggttttatgaaaaacacaggaactgcttggactgcaagtgcacatgtaataacagctgtggtagggtctggagtgctgtc |
40199483 |
T |
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| Q |
157 |
tctagcttgggctattgctcaactcggatggattgctggtcctattgttatgattctctttgcttgggttactt |
230 |
Q |
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| T |
40199484 |
tctatcttgggctattgctcaacttggatggattgctggtcctattgtcatgattctctttgcttgggttactt |
40199557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 10299851 - 10299760
Alignment:
| Q |
104 |
tggactgcaagtgcacatgtaataacagctgtggtagggtctggagttctgtctctagcttgggctattgctcaactcggatggattgctgg |
195 |
Q |
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| T |
10299851 |
tggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctgg |
10299760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 199
Target Start/End: Complemental strand, 39429280 - 39429174
Alignment:
| Q |
93 |
caggaactgtttggactgcaagtgcacatgtaataacagctgtggtagggtctggagttctgtctctagcttgggctattgctcaactcggatggattgc |
192 |
Q |
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|||||| ||||||||| ||||| |||| | ||||||||||| |||| || || || ||||| |||||||||| |||||||| || || |||||||| |
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| T |
39429280 |
caggaagtgtttggaccgcaagctcacacattataacagctgttataggatcaggggtgttgtctttagcttgggccattgctcagctaggttggattgc |
39429181 |
T |
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| Q |
193 |
tggtcct |
199 |
Q |
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||||||| |
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| T |
39429180 |
tggtcct |
39429174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 6249330 - 6249434
Alignment:
| Q |
95 |
ggaactgtttggactgcaagtgcacatgtaataacagctgtggtagggtctggagttctgtctctagcttgggctattgctcaactcggatggattgctg |
194 |
Q |
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|||| ||||| |||||||| | |||| |||||||||||||| |||| || || || ||||| |||||||||| || ||||| || || ||| |||||| |
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| T |
6249330 |
ggaagtgttttgactgcaatttcacacataataacagctgtgataggatcaggggtgttgtctttagcttgggccatagctcagctaggttgggttgctg |
6249429 |
T |
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| Q |
195 |
gtcct |
199 |
Q |
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||||| |
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| T |
6249430 |
gtcct |
6249434 |
T |
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