View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19768_high_7 (Length: 322)
Name: NF19768_high_7
Description: NF19768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19768_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 53561357 - 53561656
Alignment:
| Q |
8 |
aggtggaggatgttgcaaaaaggtggctccatgtggaaggatgttttaagggagaaatatggtgaggatgttggtgcatctttgttgcccgggg-gctat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53561357 |
aggtggaggatgttgcaaaaaggtggctccatgtggaaggatgttttgagggagaaatatggtgaggatgttggtgcatctttgttgcccggggggctat |
53561456 |
T |
|
| Q |
107 |
gtgtgcccaacctatgcttcgcggtggtggaaagatgtaactaagttgggcgatggaggagggtgaaattggtttaactcggaggtgtcttggaatgttg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
53561457 |
gtgtgcccaacctatgcttcgcggtggtggaaagatgtaactaagttgggcgatggaggagggtcaaattggtttaactcggaggtgtctaggaatgttg |
53561556 |
T |
|
| Q |
207 |
gcaacgggagggttacgaggttttggaatgacgtgtggaggggtaatagttcttttccggctaaatatccaagattgttctccttgtctaaccaaaaaga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53561557 |
gcaacgggagggttacgaggttttggaatgacgtgtggaggggtaatagttcttttccggctaaatatccaagattgttctccttgtctaaccaaaaaga |
53561656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 306
Target Start/End: Complemental strand, 22154410 - 22154324
Alignment:
| Q |
220 |
tacgaggttttggaatgacgtgtggaggggtaatagttcttttccggctaaatatccaagattgttctccttgtctaaccaaaaaga |
306 |
Q |
| |
|
|||||| ||||| ||||| || |||| | |||||||||| ||| || ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
22154410 |
tacgagcttttgaaatgaggtttggatgtgtaatagttcctttagggtgaaatatccaagattgttctccttgtctaatcagaaaga |
22154324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 306
Target Start/End: Complemental strand, 22210325 - 22210239
Alignment:
| Q |
220 |
tacgaggttttggaatgacgtgtggaggggtaatagttcttttccggctaaatatccaagattgttctccttgtctaaccaaaaaga |
306 |
Q |
| |
|
|||||| ||||| ||||| || |||| | |||||||||| ||| || ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
22210325 |
tacgagcttttgaaatgaggtttggatgtgtaatagttcctttagggtgaaatatccaagattgttctccttgtctaatcagaaaga |
22210239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 306
Target Start/End: Original strand, 4903079 - 4903212
Alignment:
| Q |
173 |
aattggtttaactcggaggtgtcttggaatgttggcaacgggagggttacgaggttttggaatgacgtgtggaggggtaatagttcttttccggctaaat |
272 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| || ||| || |||||| |||||| ||| | |||| |||||||||||| || || |||| |
|
|
| T |
4903079 |
aattggtttaactcggaggtgttgcggagggttggtaatgggcggactacgagcttttgggatgggttttggacgggtaatagttccgttagggtgaaat |
4903178 |
T |
|
| Q |
273 |
atccaagattgttctccttgtctaaccaaaaaga |
306 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |
|
|
| T |
4903179 |
atccaagattgttctccttgtctaatcagaaaga |
4903212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University