View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19768_low_12 (Length: 251)
Name: NF19768_low_12
Description: NF19768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19768_low_12 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 36425168 - 36424934
Alignment:
| Q |
15 |
tattgaaagaatcactgaattatttattataacaggaaggnnnnnnnnnncatagtattgatagaaagttcacatgttcaagccattatcataatcctta |
114 |
Q |
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| T |
36425168 |
tattgaaagaatcactgaattatttattataacaggaaggaaaaaaaaaaca--gtattgatagaaagttcacatgttcaagccattatcgtaatcctta |
36425071 |
T |
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| Q |
115 |
agaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaagccaaagccaagacattgtcatcaatggtagagttaaacaatgtgcta |
214 |
Q |
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| T |
36425070 |
agaagaaaatcctttcttcaaagtttgaacggttgcaacatcagtcttgaaagccagagccaagacattgtcatcaatggtagagttaaacaatgtgcta |
36424971 |
T |
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| Q |
215 |
gcaattgaaatagttccagcattagcactaccaaagg |
251 |
Q |
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| T |
36424970 |
gcaattgaaatagttccagcattagcactaccaaagg |
36424934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 70 - 251
Target Start/End: Complemental strand, 36428088 - 36427907
Alignment:
| Q |
70 |
tattgatagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaagcc |
169 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36428088 |
tattgaaagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaacgtctgaactgttgcaacatcagtcttgaaagcc |
36427989 |
T |
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| Q |
170 |
aaagccaagacattgtcatcaatggtagagttaaacaatgtgctagcaattgaaatagttccagcattagcactaccaaagg |
251 |
Q |
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| T |
36427988 |
aaagccaagacattgtcatcaatggtagaattaaacaatgtgctagcaattgaaatagttccagcattagcactaccaaagg |
36427907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 72 - 251
Target Start/End: Complemental strand, 36421589 - 36421410
Alignment:
| Q |
72 |
ttgatagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaagccaa |
171 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
36421589 |
ttgaaagaaagttcacatgttcaagccattatcataatccttaagaagaaaatcctttcttcaaagtttgaacggttgcaacatcagtcttgaaagccag |
36421490 |
T |
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| Q |
172 |
agccaagacattgtcatcaatggtagagttaaacaatgtgctagcaattgaaatagttccagcattagcactaccaaagg |
251 |
Q |
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| T |
36421489 |
agccaagacattgtcatcaatggtagagttaaacaatgtgctagcaattgaaatagttccagcattagcactaccaaagg |
36421410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 19144266 - 19144402
Alignment:
| Q |
113 |
taagaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaagccaaagccaagacattgtcatcaatggtagagttaaacaatgtgc |
212 |
Q |
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| T |
19144266 |
taagaagtaaaacctttcttcaaattttggatggtggtaacatcagtcttgaaagccaaagccaagacagtatcatcaatagaggtattaaacaatgtac |
19144365 |
T |
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| Q |
213 |
tagcaattgaaatagttccagcattagcactaccaaa |
249 |
Q |
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| T |
19144366 |
cagggagtgaaatagttccagcattggcactaccaaa |
19144402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 19148727 - 19148591
Alignment:
| Q |
113 |
taagaagaaaatcctttcttcaaagtctgaactgttgcaacatcagtcttgaaagccaaagccaagacattgtcatcaatggtagagttaaacaatgtgc |
212 |
Q |
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| T |
19148727 |
taagaagtaaaacctttcttcaaattttggatggtggtaacatcagtcttgaaagccaaagccaagacagtatcatcaatagaggtattaaacaatgtac |
19148628 |
T |
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| Q |
213 |
tagcaattgaaatagttccagcattagcactaccaaa |
249 |
Q |
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| T |
19148627 |
cagggagtgaaatagttccagcattggcactaccaaa |
19148591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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