View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19768_low_14 (Length: 248)

Name: NF19768_low_14
Description: NF19768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19768_low_14
NF19768_low_14
[»] chr5 (14 HSPs)
chr5 (16-125)||(12614880-12614989)
chr5 (152-248)||(12614757-12614853)
chr5 (207-244)||(2477636-2477673)
chr5 (207-244)||(3362778-3362815)
chr5 (207-244)||(6043539-6043576)
chr5 (207-244)||(11361159-11361196)
chr5 (207-244)||(12850801-12850838)
chr5 (207-244)||(38899754-38899791)
chr5 (205-244)||(25398236-25398275)
chr5 (207-244)||(4892202-4892239)
chr5 (207-244)||(14138668-14138705)
chr5 (207-244)||(22913082-22913119)
chr5 (207-244)||(33584357-33584394)
chr5 (207-235)||(4434044-4434072)
[»] chr4 (16 HSPs)
chr4 (204-244)||(36072944-36072984)
chr4 (207-244)||(2624837-2624874)
chr4 (207-244)||(4751446-4751483)
chr4 (207-244)||(10442817-10442854)
chr4 (207-244)||(22199261-22199298)
chr4 (207-244)||(31078847-31078884)
chr4 (207-244)||(33530716-33530753)
chr4 (207-244)||(49387916-49387953)
chr4 (208-244)||(7745140-7745176)
chr4 (207-244)||(21802350-21802387)
chr4 (207-244)||(24128239-24128276)
chr4 (207-244)||(24392667-24392704)
chr4 (207-244)||(47290066-47290103)
chr4 (207-235)||(44893426-44893454)
chr4 (207-235)||(46441844-46441872)
chr4 (207-235)||(53123030-53123058)
[»] chr8 (15 HSPs)
chr8 (205-244)||(34665380-34665419)
chr8 (206-244)||(24211581-24211619)
chr8 (207-244)||(1645993-1646030)
chr8 (207-244)||(15187560-15187597)
chr8 (207-244)||(32064745-32064782)
chr8 (207-244)||(32393858-32393895)
chr8 (208-248)||(27782141-27782181)
chr8 (205-244)||(20091829-20091868)
chr8 (207-244)||(17841878-17841915)
chr8 (207-244)||(26042144-26042181)
chr8 (207-244)||(35353041-35353078)
chr8 (207-244)||(40780157-40780194)
chr8 (207-244)||(42755070-42755107)
chr8 (208-236)||(14128865-14128893)
chr8 (207-243)||(41819807-41819843)
[»] chr7 (12 HSPs)
chr7 (205-244)||(42611809-42611848)
chr7 (207-244)||(3961979-3962016)
chr7 (207-244)||(4974763-4974800)
chr7 (207-244)||(15329273-15329310)
chr7 (207-244)||(15577878-15577915)
chr7 (207-244)||(24394972-24395009)
chr7 (207-244)||(45637712-45637749)
chr7 (207-244)||(48880955-48880992)
chr7 (207-236)||(20010133-20010162)
chr7 (207-236)||(34482835-34482864)
chr7 (207-244)||(37477108-37477145)
chr7 (207-235)||(25167887-25167915)
[»] scaffold0178 (1 HSPs)
scaffold0178 (207-244)||(11621-11658)
[»] chr6 (12 HSPs)
chr6 (207-244)||(6127275-6127312)
chr6 (207-244)||(17705493-17705530)
chr6 (207-244)||(23291112-23291149)
chr6 (207-244)||(28675148-28675185)
chr6 (207-244)||(33695355-33695392)
chr6 (207-244)||(33696696-33696733)
chr6 (210-248)||(8515749-8515787)
chr6 (205-234)||(6031779-6031808)
chr6 (207-236)||(17176057-17176086)
chr6 (207-236)||(18365609-18365638)
chr6 (207-236)||(18370873-18370902)
chr6 (207-236)||(25986930-25986959)
[»] chr3 (17 HSPs)
chr3 (207-244)||(2754717-2754754)
chr3 (207-244)||(3456064-3456101)
chr3 (207-244)||(3574555-3574592)
chr3 (207-244)||(6041884-6041921)
chr3 (207-244)||(11347268-11347305)
chr3 (207-244)||(37217081-37217118)
chr3 (207-244)||(42297353-42297390)
chr3 (207-244)||(48160905-48160942)
chr3 (205-244)||(40327873-40327912)
chr3 (207-244)||(3137442-3137479)
chr3 (207-244)||(8320612-8320649)
chr3 (207-244)||(24343547-24343584)
chr3 (207-244)||(30385011-30385048)
chr3 (207-236)||(33113793-33113822)
chr3 (207-236)||(33145713-33145742)
chr3 (207-244)||(34482938-34482975)
chr3 (207-236)||(47402632-47402661)
[»] chr2 (11 HSPs)
chr2 (207-244)||(9293604-9293641)
chr2 (207-248)||(14941390-14941431)
chr2 (207-244)||(21936081-21936118)
chr2 (207-244)||(35160757-35160794)
chr2 (208-244)||(10661888-10661924)
chr2 (207-244)||(7475536-7475573)
chr2 (207-248)||(9723405-9723446)
chr2 (207-244)||(13354846-13354883)
chr2 (207-244)||(23268090-23268127)
chr2 (207-244)||(33380207-33380244)
chr2 (207-235)||(43330912-43330940)
[»] chr1 (13 HSPs)
chr1 (207-244)||(18404442-18404479)
chr1 (207-248)||(34519758-34519799)
chr1 (207-244)||(40214988-40215025)
chr1 (205-244)||(44094696-44094735)
chr1 (207-244)||(9910321-9910358)
chr1 (211-244)||(16045826-16045859)
chr1 (207-244)||(19015404-19015441)
chr1 (207-236)||(25463676-25463705)
chr1 (207-244)||(32000295-32000332)
chr1 (207-244)||(36966736-36966773)
chr1 (207-244)||(37821862-37821899)
chr1 (207-236)||(51620980-51621009)
chr1 (207-235)||(41876479-41876507)
[»] scaffold0085 (1 HSPs)
scaffold0085 (204-244)||(47847-47887)
[»] scaffold0471 (1 HSPs)
scaffold0471 (207-244)||(12842-12879)
[»] scaffold0204 (1 HSPs)
scaffold0204 (207-244)||(4396-4433)
[»] scaffold0096 (1 HSPs)
scaffold0096 (207-236)||(41011-41040)
[»] scaffold0665 (1 HSPs)
scaffold0665 (208-236)||(3069-3097)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 12614989 - 12614880
Alignment:
Q  16 gatttaagacattgaagtgtgtttctctcaagatctgatgttcattctcctcgagtcaattttgttggagtaatttgacttcttaaaaaatgtgatatat 115  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  12614989 gatttaggacattgaagtgtgtttttctcaagatctcatgttcattctcctcgagtcaattttgttgaaataatttgacttcttaaaaaatgtgatatat 12614890  T
Q  116 ttacaagaac 125  Q
    ||||||||||    
T  12614889 ttacaagaac 12614880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 12614853 - 12614757
Alignment:
Q  152 tgtcacgggaattaaaactaaaactctttcctttttccagaaaccatttgcatacgagcaatgctatatatcaagaaagattttaccaagaaagatt 248  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  12614853 tgtcacgggaattaaaaccaaaactctttcctttttccagaaaccatttgcatacgagcaatgctatatatcaagaaatattttatcaagaaagatt 12614757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 2477636 - 2477673
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  2477636 gagcaatgctatatatcaagaaagattttatcaagaaa 2477673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 3362778 - 3362815
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  3362778 gagcaatgctatatatcaagaaagattttatcaagaaa 3362815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 6043576 - 6043539
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  6043576 gagcaatgctatatatcaagaaagattttatcaagaaa 6043539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 11361196 - 11361159
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  11361196 gagcaatgctatatatcaagaaagattttatcaagaaa 11361159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 12850801 - 12850838
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12850801 gagcaatgctatatatcaagaaagattttatcaagaaa 12850838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 38899791 - 38899754
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  38899791 gagcaatgctatatatcaagaaagattttatcaagaaa 38899754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 25398236 - 25398275
Alignment:
Q  205 acgagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  25398236 acgagcaatgctatatatcaagaaagattttttcaagaaa 25398275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 4892202 - 4892239
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  4892202 gagcaatgctatatatcaagaaagattttttcaagaaa 4892239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 14138668 - 14138705
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  14138668 gagcaatgttatatatcaagaaagattttatcaagaaa 14138705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 22913119 - 22913082
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  22913119 gagcaatgctatatatcaagaaagattttttcaagaaa 22913082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 33584394 - 33584357
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  33584394 gagcaatgctatatatcaagaaagattttttcaagaaa 33584357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 4434072 - 4434044
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttt 235  Q
    |||||||||||||||||||||||||||||    
T  4434072 gagcaatgctatatatcaagaaagatttt 4434044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 36072944 - 36072984
Alignment:
Q  204 tacgagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  36072944 tacgagcaatgctatatatcaagaaagattttatcaagaaa 36072984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 2624837 - 2624874
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  2624837 gagcaatgctatatatcaagaaagattttatcaagaaa 2624874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 4751446 - 4751483
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  4751446 gagcaatgctatatatcaagaaagattttatcaagaaa 4751483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 10442854 - 10442817
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  10442854 gagcaatgctatatatcaagaaagattttatcaagaaa 10442817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 22199261 - 22199298
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  22199261 gagcaatgctatatatcaagaaagattttatcaagaaa 22199298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 31078884 - 31078847
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  31078884 gagcaatgctatatatcaagaaagattttatcaagaaa 31078847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 33530753 - 33530716
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  33530753 gagcaatgctatatatcaagaaagattttatcaagaaa 33530716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 49387953 - 49387916
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  49387953 gagcaatgctatatatcaagaaagattttatcaagaaa 49387916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 7745176 - 7745140
Alignment:
Q  208 agcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    ||||||||||||||||||||||||||||| |||||||    
T  7745176 agcaatgctatatatcaagaaagattttatcaagaaa 7745140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 21802387 - 21802350
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  21802387 gagcaatgctatatatcaagaaatattttatcaagaaa 21802350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 24128239 - 24128276
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  24128239 gagcaatgctatatatcaagaaagattttttcaagaaa 24128276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 24392667 - 24392704
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  24392667 gagcaatgctatatatcaagaaagattttctcaagaaa 24392704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 47290066 - 47290103
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  47290066 gagcaatgctatatatcaagaaagattttttcaagaaa 47290103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 44893426 - 44893454
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttt 235  Q
    |||||||||||||||||||||||||||||    
T  44893426 gagcaatgctatatatcaagaaagatttt 44893454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 46441844 - 46441872
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttt 235  Q
    |||||||||||||||||||||||||||||    
T  46441844 gagcaatgctatatatcaagaaagatttt 46441872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 53123030 - 53123058
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttt 235  Q
    |||||||||||||||||||||||||||||    
T  53123030 gagcaatgctatatatcaagaaagatttt 53123058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 34665380 - 34665419
Alignment:
Q  205 acgagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  34665380 acgagcaatgctatatatcaagaaagattttatcaagaaa 34665419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 24211619 - 24211581
Alignment:
Q  206 cgagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  24211619 cgagcaatgctatatatcaagaaagattttatcaagaaa 24211581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 1646030 - 1645993
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  1646030 gagcaatgctatatatcaagaaagattttatcaagaaa 1645993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 15187560 - 15187597
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  15187560 gagcaatgctatatatcaagaaagattttatcaagaaa 15187597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 32064745 - 32064782
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  32064745 gagcaatgctatatatcaagaaagattttatcaagaaa 32064782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 32393858 - 32393895
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  32393858 gagcaatgctatatatcaagaaagattttatcaagaaa 32393895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 27782181 - 27782141
Alignment:
Q  208 agcaatgctatatatcaagaaagattttaccaagaaagatt 248  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  27782181 agcaatgctatatatcaagaaatattttatcaagaaagatt 27782141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 20091868 - 20091829
Alignment:
Q  205 acgagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  20091868 acgagcaatgctatatatcaagaaatattttatcaagaaa 20091829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 17841915 - 17841878
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  17841915 gagcaatgctatatatcaagaaagattttttcaagaaa 17841878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 26042181 - 26042144
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  26042181 gagcaatgctatatattaagaaagattttatcaagaaa 26042144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 35353041 - 35353078
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  35353041 gagcaatgctatatatcaagaaagattttttcaagaaa 35353078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 40780194 - 40780157
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  40780194 gagcaatgctatatatcaagaaagattttttcaagaaa 40780157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 42755107 - 42755070
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  42755107 gagcaatgatatatatcaagaaagattttatcaagaaa 42755070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 14128865 - 14128893
Alignment:
Q  208 agcaatgctatatatcaagaaagatttta 236  Q
    |||||||||||||||||||||||||||||    
T  14128865 agcaatgctatatatcaagaaagatttta 14128893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 41819843 - 41819807
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaa 243  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  41819843 gagcaatgttatatatcaagaaagattttatcaagaa 41819807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 42611809 - 42611848
Alignment:
Q  205 acgagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  42611809 acgagcaatgctatatatcaagaaagattttatcaagaaa 42611848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 3961979 - 3962016
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  3961979 gagcaatgctatatatcaagaaagattttatcaagaaa 3962016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 4974800 - 4974763
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  4974800 gagcaatgctatatatcaagaaagattttatcaagaaa 4974763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 15329273 - 15329310
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  15329273 gagcaatgctatatatcaagaaagattttatcaagaaa 15329310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 15577915 - 15577878
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  15577915 gagcaatgctatatatcaagaaagattttatcaagaaa 15577878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 24394972 - 24395009
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  24394972 gagcaatgctatatatcaagaaagattttatcaagaaa 24395009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 45637712 - 45637749
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  45637712 gagcaatgctatatatcaagaaagattttatcaagaaa 45637749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 48880992 - 48880955
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  48880992 gagcaatgctatatatcaagaaagattttatcaagaaa 48880955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 20010162 - 20010133
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttta 236  Q
    ||||||||||||||||||||||||||||||    
T  20010162 gagcaatgctatatatcaagaaagatttta 20010133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 34482835 - 34482864
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttta 236  Q
    ||||||||||||||||||||||||||||||    
T  34482835 gagcaatgctatatatcaagaaagatttta 34482864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 37477145 - 37477108
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  37477145 gagcaatgctatatatcaagaaagattttctcaagaaa 37477108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 25167915 - 25167887
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttt 235  Q
    |||||||||||||||||||||||||||||    
T  25167915 gagcaatgctatatatcaagaaagatttt 25167887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 11621 - 11658
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  11621 gagcaatgctatatatcaagaaagattttatcaagaaa 11658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 6127275 - 6127312
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  6127275 gagcaatgctatatatcaagaaagattttatcaagaaa 6127312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 17705530 - 17705493
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  17705530 gagcaatgctatatatcaagaaagattttatcaagaaa 17705493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 23291149 - 23291112
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  23291149 gagcaatgctatatatcaagaaagattttatcaagaaa 23291112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 28675148 - 28675185
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  28675148 gagcaatgctatatatcaagaaagattttatcaagaaa 28675185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 33695392 - 33695355
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  33695392 gagcaatgctatatatcaagaaagattttatcaagaaa 33695355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 33696696 - 33696733
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  33696696 gagcaatgctatatatcaagaaagattttatcaagaaa 33696733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 8515787 - 8515749
Alignment:
Q  210 caatgctatatatcaagaaagattttaccaagaaagatt 248  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  8515787 caatgctatatatcaagaaagattttatcaagacagatt 8515749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 6031808 - 6031779
Alignment:
Q  205 acgagcaatgctatatatcaagaaagattt 234  Q
    ||||||||||||||||||||||||||||||    
T  6031808 acgagcaatgctatatatcaagaaagattt 6031779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 17176086 - 17176057
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttta 236  Q
    ||||||||||||||||||||||||||||||    
T  17176086 gagcaatgctatatatcaagaaagatttta 17176057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 18365638 - 18365609
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttta 236  Q
    ||||||||||||||||||||||||||||||    
T  18365638 gagcaatgctatatatcaagaaagatttta 18365609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 18370902 - 18370873
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttta 236  Q
    ||||||||||||||||||||||||||||||    
T  18370902 gagcaatgctatatatcaagaaagatttta 18370873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 25986930 - 25986959
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttta 236  Q
    ||||||||||||||||||||||||||||||    
T  25986930 gagcaatgctatatatcaagaaagatttta 25986959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 2754717 - 2754754
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  2754717 gagcaatgctatatatcaagaaagattttatcaagaaa 2754754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 3456064 - 3456101
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  3456064 gagcaatgctatatatcaagaaagattttatcaagaaa 3456101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 3574592 - 3574555
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  3574592 gagcaatgctatatatcaagaaagattttatcaagaaa 3574555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 6041884 - 6041921
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  6041884 gagcaatgctatatatcaagaaagattttatcaagaaa 6041921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 11347268 - 11347305
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  11347268 gagcaatgctatatatcaagaaagattttatcaagaaa 11347305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 37217118 - 37217081
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  37217118 gagcaatgctatatatcaagaaagattttatcaagaaa 37217081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 42297353 - 42297390
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  42297353 gagcaatgctatatatcaagaaagattttatcaagaaa 42297390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 48160905 - 48160942
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  48160905 gagcaatgctatatatcaagaaagattttatcaagaaa 48160942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 40327873 - 40327912
Alignment:
Q  205 acgagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  40327873 acgatcaatgctatatatcaagaaagattttatcaagaaa 40327912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 3137479 - 3137442
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  3137479 gagcaatgctatatatcaagaaagattttttcaagaaa 3137442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 8320649 - 8320612
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  8320649 gagcaatgttatatatcaagaaagattttatcaagaaa 8320612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 24343547 - 24343584
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  24343547 gagcaatgctatatattaagaaagattttatcaagaaa 24343584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 30385011 - 30385048
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  30385011 gagcaatgctatttatcaagaaagattttatcaagaaa 30385048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 33113793 - 33113822
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttta 236  Q
    ||||||||||||||||||||||||||||||    
T  33113793 gagcaatgctatatatcaagaaagatttta 33113822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 33145713 - 33145742
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttta 236  Q
    ||||||||||||||||||||||||||||||    
T  33145713 gagcaatgctatatatcaagaaagatttta 33145742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 34482975 - 34482938
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  34482975 gagcaatgctatatatcaagaaagattttttcaagaaa 34482938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 47402661 - 47402632
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttta 236  Q
    ||||||||||||||||||||||||||||||    
T  47402661 gagcaatgctatatatcaagaaagatttta 47402632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 9293641 - 9293604
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  9293641 gagcaatgctatatatcaagaaagattttatcaagaaa 9293604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 14941431 - 14941390
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaagatt 248  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  14941431 gagcaatgctatatatcaagaaagattttattaagaaagatt 14941390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 21936081 - 21936118
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  21936081 gagcaatgctatatatcaagaaagattttatcaagaaa 21936118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 35160757 - 35160794
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  35160757 gagcaatgctatatatcaagaaagattttatcaagaaa 35160794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 10661888 - 10661924
Alignment:
Q  208 agcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    ||||||||||||||||||||||||||||| |||||||    
T  10661888 agcaatgctatatatcaagaaagattttatcaagaaa 10661924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 7475573 - 7475536
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  7475573 gagcaatgctatatatcaagaaagattttttcaagaaa 7475536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 9723405 - 9723446
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaagatt 248  Q
    |||||||||||||||| |||||||||||||  ||||||||||    
T  9723405 gagcaatgctatatattaagaaagattttattaagaaagatt 9723446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 13354846 - 13354883
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  13354846 gagcaatgttatatatcaagaaagattttatcaagaaa 13354883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 23268127 - 23268090
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  23268127 gagcaatgctatatatcaagaaagattttttcaagaaa 23268090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 33380207 - 33380244
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  33380207 gagcaatgctatatatcaagaaagattttttcaagaaa 33380244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 43330912 - 43330940
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttt 235  Q
    |||||||||||||||||||||||||||||    
T  43330912 gagcaatgctatatatcaagaaagatttt 43330940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 18404442 - 18404479
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  18404442 gagcaatgctatatatcaagaaagattttatcaagaaa 18404479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 34519758 - 34519799
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaagatt 248  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  34519758 gagcaatgctatatatcaagaaagattttattaagaaagatt 34519799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 40214988 - 40215025
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||| |||||||    
T  40214988 gagcaatgctatatatcaagaaagattttatcaagaaa 40215025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 44094696 - 44094735
Alignment:
Q  205 acgagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  44094696 acgagcaatgctatatatcaagaaatattttatcaagaaa 44094735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 9910358 - 9910321
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  9910358 gagcaatgctatatatcaagaaagattttttcaagaaa 9910321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 16045859 - 16045826
Alignment:
Q  211 aatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||| |||||||    
T  16045859 aatgctatatatcaagaaagattttatcaagaaa 16045826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 19015404 - 19015441
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  19015404 gagcaatgctatatatcaagaaagattttttcaagaaa 19015441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 25463676 - 25463705
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttta 236  Q
    ||||||||||||||||||||||||||||||    
T  25463676 gagcaatgctatatatcaagaaagatttta 25463705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 32000332 - 32000295
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  32000332 gagcaatgctatatatcaagaaagattttctcaagaaa 32000295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 36966773 - 36966736
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  36966773 gagcaatgctatatatcaagaaagattttttcaagaaa 36966736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 37821899 - 37821862
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  37821899 gagcaatgctatatatcaagaaagattttttcaagaaa 37821862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 51620980 - 51621009
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttta 236  Q
    ||||||||||||||||||||||||||||||    
T  51620980 gagcaatgctatatatcaagaaagatttta 51621009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 41876507 - 41876479
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttt 235  Q
    |||||||||||||||||||||||||||||    
T  41876507 gagcaatgctatatatcaagaaagatttt 41876479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 47847 - 47887
Alignment:
Q  204 tacgagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  47847 tacgagcaatgctatttatcaagaaagattttatcaagaaa 47887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 12842 - 12879
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  12842 gagcaatgctatatatcaagaaagattttttcaagaaa 12879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 4396 - 4433
Alignment:
Q  207 gagcaatgctatatatcaagaaagattttaccaagaaa 244  Q
    |||||||||||||||||||||||||||||  |||||||    
T  4396 gagcaatgctatatatcaagaaagattttttcaagaaa 4433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 41011 - 41040
Alignment:
Q  207 gagcaatgctatatatcaagaaagatttta 236  Q
    ||||||||||||||||||||||||||||||    
T  41011 gagcaatgctatatatcaagaaagatttta 41040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 3069 - 3097
Alignment:
Q  208 agcaatgctatatatcaagaaagatttta 236  Q
    |||||||||||||||||||||||||||||    
T  3069 agcaatgctatatatcaagaaagatttta 3097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University