View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19768_low_16 (Length: 244)
Name: NF19768_low_16
Description: NF19768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19768_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 5230463 - 5230690
Alignment:
| Q |
1 |
catggattgatgataggtttgattttgatccagaagaatgcaatgttgctaatggaaaatggatatttaacagttcaataaagcctttatactcagataa |
100 |
Q |
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| T |
5230463 |
catggattgatgataggtttgattttgatccagaagaatgcaatgttgctaatggaaaatggatatttaacagttcaataaagcctttatactcagataa |
5230562 |
T |
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| Q |
101 |
aagctgtccatacatagataaacaattttcttgtgtcaagaatggaaggaatgattctgattatcttcattgggagtggcagccagaagattgtaccttg |
200 |
Q |
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| T |
5230563 |
aagctgtccatacatagataaacaattttcttgtgtcaagaatggaaggaatgattctgattatcttcattgggagtggcagccagaagattgtaccttg |
5230662 |
T |
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| Q |
201 |
ccacagtaagttttcacacactctaact |
228 |
Q |
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| T |
5230663 |
ccacagtaagttttcacacactctaact |
5230690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 25338224 - 25338426
Alignment:
| Q |
1 |
catggattgatgataggtttgattttgatccagaagaatgcaatgttgctaatggaaaatggatatttaacagttcaataaagcctttatactcagataa |
100 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||| | |||||| ||||||||||| | ||| | || | |
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| T |
25338224 |
catggattgatgacaggtttgattttgactcagaagaatgcaacattgccaatggaaaatgggtttttaaccaatcaataaagccaatctacactgacat |
25338323 |
T |
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| Q |
101 |
aagctgtccatacatagataaacaattttcttgtgtcaagaatggaaggaatgattctgattatcttcattgggagtggcagccagaagattgtaccttg |
200 |
Q |
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| T |
25338324 |
aacttgtccatatatagaaagacaattttcttgtataaaaaatggtagaacagattctgattatcaacattgggagtggcagccagaagattgcaccttg |
25338423 |
T |
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| Q |
201 |
cca |
203 |
Q |
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||| |
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| T |
25338424 |
cca |
25338426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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