View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19768_low_17 (Length: 239)
Name: NF19768_low_17
Description: NF19768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19768_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 36424737 - 36424939
Alignment:
| Q |
20 |
caatccaccacatacacaccctcgttcagccgagctactcttccttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacact |
119 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424737 |
caatccaccacacacacaccctcgttcagccgagctactcttcctcgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacact |
36424836 |
T |
|
| Q |
120 |
caaacacttcaacccggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcagcct |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36424837 |
caaacacttcaacccggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcggcct |
36424936 |
T |
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| Q |
220 |
ttg |
222 |
Q |
| |
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||| |
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| T |
36424937 |
ttg |
36424939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 36421213 - 36421415
Alignment:
| Q |
20 |
caatccaccacatacacaccctcgttcagccgagctactcttccttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacact |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||| |
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| T |
36421213 |
caatccaccacatacacaccctcgttcagccgagctactcttcctcgttaaaggttcccttaatgttggttttgttgacacaaccaataagctattcact |
36421312 |
T |
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| Q |
120 |
caaacacttcaacccggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcagcct |
219 |
Q |
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|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36421313 |
cagacactacaacctggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcggcct |
36421412 |
T |
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| Q |
220 |
ttg |
222 |
Q |
| |
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||| |
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| T |
36421413 |
ttg |
36421415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 36427710 - 36427912
Alignment:
| Q |
20 |
caatccaccacatacacaccctcgttcagccgagctactcttccttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacact |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| || ||||| || || ||||||| |||| |
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| T |
36427710 |
caatccaccacacacacaccctcgttcagccgagctactcttcctcgcgaaaggttccctgaatgttggttttgtggacaccactaataagctattcact |
36427809 |
T |
|
| Q |
120 |
caaacacttcaacccggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcagcct |
219 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||| ||||||| |||||||| |||| |
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| T |
36427810 |
caaacactacaacccggtgacatgtttgtgtttccaaagggacttgttcattttcagttcaatgctgatacttcaaaacctgctttggctttttctgcct |
36427909 |
T |
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| Q |
220 |
ttg |
222 |
Q |
| |
|
||| |
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|
| T |
36427910 |
ttg |
36427912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 19148393 - 19148475
Alignment:
| Q |
21 |
aatccaccacatacacaccctcgttcagccgagctactcttccttgttaaaggttcccttaatgttggtttcgttgacacaac |
103 |
Q |
| |
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||||||||||| |||||||| |||||||| || |||||||| ||||| ||||||| ||| | ||||| || ||||||||||| |
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| T |
19148393 |
aatccaccacacacacacccacgttcagctgaactactctttgttgttcaaggttcacttcaagttgggtttgttgacacaac |
19148475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 19144600 - 19144520
Alignment:
| Q |
21 |
aatccaccacatacacaccctcgttcagccgagctactcttccttgttaaaggttcccttaatgttggtttcgttgacaca |
101 |
Q |
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||||||||||| |||||||| |||||||| || |||||||| ||||| ||||||| ||| | ||||| || ||||||||| |
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| T |
19144600 |
aatccaccacacacacacccacgttcagctgaactactctttgttgttcaaggttcacttcaagttgggtttgttgacaca |
19144520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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