View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19768_low_18 (Length: 238)
Name: NF19768_low_18
Description: NF19768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19768_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 40571795 - 40571583
Alignment:
| Q |
10 |
caattaaaagctctaggaaagacaatatttctaagatctgcaggcagaactggagcaaaaccaaaaaattgtaacattggtaggaaggtttaaaccaaac |
109 |
Q |
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| T |
40571795 |
caattaaaagctctaggaaagacaatatttctaagatctgcaggcagaactggagcaaaaccaaaaaattgtaacattggtaggaaggtttaaaccaaac |
40571696 |
T |
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| Q |
110 |
ttggtaaaaccaacttgattaatctcacgatgaacatgaattataacaaaagag-nnnnnnntatatataataccttcacaaccattaatgaggtaagga |
208 |
Q |
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| T |
40571695 |
ttggtaaaaccaacttgattaatctcacgatgaacatgaattataacaaaagagaaaaaaaatatatataataccttcgcaaccattaatgaggtaagga |
40571596 |
T |
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| Q |
209 |
tttccccgatatc |
221 |
Q |
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||||||||||||| |
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| T |
40571595 |
tttccccgatatc |
40571583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 40578230 - 40578006
Alignment:
| Q |
10 |
caattaaaagctctaggaaagacaatatttctaagatctgcaggcagaact---------------ggagcaaaaccaaaaaattgtaacattggtagga |
94 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| ||||||| |||| ||||||||| |
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| T |
40578230 |
caattaaaagctctaggaaagaatacatttctaagatctgcaggcagaactagagcgataaattctggagcaaaac-aaaaaatcataactttggtagga |
40578132 |
T |
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| Q |
95 |
aggtttaaaccaaacttggtaaaaccaacttgattaatctcacgatgaacatgaattataacaaaagagnnnnnnntatatataataccttcacaaccat |
194 |
Q |
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| T |
40578131 |
aggtttagaccaaacttcgtaaaaccaacttggttaatctcacgaagaacatgaatcataacaaaagagaaaaaaa-atatataataccttggcaaccat |
40578033 |
T |
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| Q |
195 |
taatgaggtaaggatttccccgatatc |
221 |
Q |
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| T |
40578032 |
taatgaggtaaggatttccccgatatc |
40578006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 40566934 - 40566884
Alignment:
| Q |
171 |
tatatataataccttcacaaccattaatgaggtaaggatttccccgatatc |
221 |
Q |
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|||||||| |||||| ||||||| |||||||||||||||||||||||||| |
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| T |
40566934 |
tatatatagtaccttggcaaccatgaatgaggtaaggatttccccgatatc |
40566884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 40589905 - 40589863
Alignment:
| Q |
179 |
ataccttcacaaccattaatgaggtaaggatttccccgatatc |
221 |
Q |
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| T |
40589905 |
ataccttcgcaaccatgaatgaggtaaggatttcccctatatc |
40589863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 40600951 - 40600902
Alignment:
| Q |
172 |
atatataataccttcacaaccattaatgaggtaaggatttccccgatatc |
221 |
Q |
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|||||||||||||| ||||||| || ||| ||||||||||||||||||| |
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| T |
40600951 |
atatataataccttggcaaccatgaacgagataaggatttccccgatatc |
40600902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 2016741 - 2016790
Alignment:
| Q |
172 |
atatataataccttcacaaccattaatgaggtaaggatttccccgatatc |
221 |
Q |
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|||||| ||||||| ||||||| |||||||||||||||||||| ||||| |
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| T |
2016741 |
atatatgataccttggcaaccatgaatgaggtaaggatttcccctatatc |
2016790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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