View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19768_low_2 (Length: 492)
Name: NF19768_low_2
Description: NF19768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19768_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Original strand, 4301466 - 4301929
Alignment:
| Q |
19 |
gctcatccacaaccaacgtcgacggcatcatatgggcttgagacaacgaagggttccatcatagcaaaacgggtgtgtttcatggttaaattagtttgga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301466 |
gctcatccacaaccaacgtcgacggcatcatatgggcttgagacaacgaagggctccatcatagcaaaacgggtgtgtttcatggttaaattagtttgga |
4301565 |
T |
|
| Q |
119 |
gaccattcattgcatcatcagttgagaaatcaatcaaagccaccaatggttatgtttcacgaaaggaacataagtcaaattccaagaaagatgattctga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301566 |
gaccattcattgcatcatcagttgagaaatcaatcaaagccaccaatggttatgtttcacgaaaggaacataagtcaaattccaagaaagatgattctga |
4301665 |
T |
|
| Q |
219 |
agacattgatgaagccaattctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301666 |
agacattgatgaagccaattctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaat |
4301765 |
T |
|
| Q |
319 |
attatcatatatgaatttatttgcgataagtctcttcattggtatttatttgaaaatagtgaagtagttattgattggcctcgaagatatggtattgcac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301766 |
attatcatatatgaatttatttgcgataagtctcttcattggtatttatttgaaaatagtgaagtagttattgattggcctcgaagatatggtattgcac |
4301865 |
T |
|
| Q |
419 |
ttgggattgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatga |
482 |
Q |
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| T |
4301866 |
ttgggattgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatga |
4301929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 236 - 370
Target Start/End: Original strand, 40668093 - 40668227
Alignment:
| Q |
236 |
attctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatt |
335 |
Q |
| |
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||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
40668093 |
attctgaggtttatgtcttgagttttgctagacacaagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaata |
40668192 |
T |
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| Q |
336 |
tatttgcgataagtctcttcattggtatttatttg |
370 |
Q |
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| T |
40668193 |
tatttgcaataagtctcttcattggcatttatttg |
40668227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 121 - 244
Target Start/End: Complemental strand, 33959167 - 33959044
Alignment:
| Q |
121 |
ccattcattgcatcatcagttgagaaatcaatcaaagccaccaatggttatgtttcacgaaaggaacataagtcaaattccaagaaagatgattctgaag |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||| |
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| T |
33959167 |
ccattcattgcatcatcagttgagaaatcaatcaaagcaaacaatggttatgtttcacgaaaggagcataagtcaaatacaaagcaagatgattctgaag |
33959068 |
T |
|
| Q |
221 |
acattgatgaagccaattctgaag |
244 |
Q |
| |
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|||| ||||||||||| ||||||| |
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| T |
33959067 |
acatagatgaagccaagtctgaag |
33959044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 40668312 - 40668369
Alignment:
| Q |
370 |
gaaaatagtgaagtagttattgattggcctcgaagatatggtattgcacttgggattg |
427 |
Q |
| |
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||||||||||||| |||| |||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
40668312 |
gaaaatagtgaagcagttcttgattggtctcaaagatatggtattgcacttgggattg |
40668369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 5085365 - 5085421
Alignment:
| Q |
426 |
tgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatga |
482 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5085365 |
tgtattcgagaaaagaggaattgatgaaacacaacccttgaaatttgtaactgatga |
5085421 |
T |
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