View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19768_low_20 (Length: 227)
Name: NF19768_low_20
Description: NF19768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19768_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 5230199 - 5230371
Alignment:
| Q |
1 |
taattaaggatataatagcagaaaaacgaatgatttcatcaaaaataacaaaacttgttcgnnnnnnnaatatgtgtaaataaccttaatacgtagatta |
100 |
Q |
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| T |
5230199 |
taattaaggatataatagcagaaaaatgaataatttcttcaaaaataacaaaacttgttcgttttcttaatatgtgtaaataaccttaaaacgtagatta |
5230298 |
T |
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| Q |
101 |
aaaaagaggggagtgcgtaattagcttcgcaaatgcaccaaaactatctcatcatattctcattctactttcc |
173 |
Q |
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| T |
5230299 |
aaaaagaggggagtgcgtaattagcttcgcaaatgcaccaaaactatctcatcatattctcattctactttcc |
5230371 |
T |
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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 5230386 - 5230420
Alignment:
| Q |
193 |
gctttaccaatttgactcttgataatgtaattttt |
227 |
Q |
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| T |
5230386 |
gctttaccaatttgactcttgataatgtaattttt |
5230420 |
T |
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