View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19768_low_3 (Length: 437)
Name: NF19768_low_3
Description: NF19768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19768_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 50 - 426
Target Start/End: Original strand, 6281811 - 6282186
Alignment:
| Q |
50 |
taattatatgaacgaatctccttcacatattatattacaatggttcctaagctttctttctaagaatagtagcatgaaatgttctctagtgaaaacgtat |
149 |
Q |
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| T |
6281811 |
taattatatgaacgaatctccttcacatattatattacaatggttcctaagctttctttctaagaatagtagtatgaaatgttctcttgtgaaaacggat |
6281910 |
T |
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| Q |
150 |
ataaaggagcaaattgtgaatctcaatttgcacacgtgttgaatactccaatgatttgaaaaactatttatgttcccaacagatacagtgagaaataacc |
249 |
Q |
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| T |
6281911 |
atgaaggagcaaattgtgaatctcaatttgcacacatgttgaatactccaatgatttgaaaaactatttaagttcc-aacagacacagtgagaaataacc |
6282009 |
T |
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| Q |
250 |
atctcaaacatacaaagttcaaacaacactaactctacatttcatattcattaagtttctaaacactttcatagaaaatggactcacaaaagatgagcta |
349 |
Q |
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| T |
6282010 |
atctcaaacatacaaagttcaaacaaaactaactctacatttcatattcattaagtttctaaacactttcatagaaaatggactcacaaaagatgagcta |
6282109 |
T |
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| Q |
350 |
caatgctggacaagccaagggccaaactgaggtctgccttaatgaaatcttactatcgtataatctcttcatttcat |
426 |
Q |
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| T |
6282110 |
caatgctggacaagccaagggccaaactgaggtctgccttaatgaaatctcactatcgtataatctcttcatttcat |
6282186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 382
Target Start/End: Complemental strand, 6226447 - 6226410
Alignment:
| Q |
345 |
agctacaatgctggacaagccaagggccaaactgaggt |
382 |
Q |
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| T |
6226447 |
agctacaatgctggacaggccaagggccaaactcaggt |
6226410 |
T |
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