View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19769_high_13 (Length: 368)
Name: NF19769_high_13
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 54226409 - 54226075
Alignment:
| Q |
19 |
cggagtacctctcgactggccaatcatctgagaaaactgatgtgtttggattcggcattctcttattagagcttataaccggaatgacagcccttgagtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54226409 |
cggagtacctctcgactggccaatcatctgagaaaactgatgtgtttggattcggcattctcttattagagcttataaccggaatgacagcccttgagtt |
54226310 |
T |
|
| Q |
119 |
tgggaaaaccttgaatcaaaaaggtgctatgctagagtgggtaagtccatactctacaatccaaacattcttgtgcatttaattcattgatattaaacac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54226309 |
tgggaaaaccttgaatcaaaaaggtgctatgctagagtgggtaagtccatactctacaatccaaacattcttgtgcatttaattcattgatattaaacac |
54226210 |
T |
|
| Q |
219 |
gattctttgctaattaaactaatatcttaattcttagctatataaatatatgatgtttaactcttcattgatagtttctcgtgcttggcttttccttgat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54226209 |
gattctttgctaattaaactaatatcttaattcttagctatataaatatatgatgtttaactcttcattgatagtttcttgtgcttggcttttccttgat |
54226110 |
T |
|
| Q |
319 |
cttttcaatatgtattgatctacacttgacacagg |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
54226109 |
cttttcaatatgtattgatctacacttgacacagg |
54226075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 22 - 353
Target Start/End: Complemental strand, 37425222 - 37424892
Alignment:
| Q |
22 |
agtacctctcgactggccaatcatctgagaaaactgatgtgtttggattcggcattctcttattagagcttataaccggaatgacagcccttgagtttgg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
37425222 |
agtacctctcgactggccaatcatctgagaaaactgatgtgtttggattcggcattctcttattagagcttataactggaatgacaacccttgagtttgg |
37425123 |
T |
|
| Q |
122 |
gaaaaccttgaatcaaaaaggtgctatgctagagtgggtaagtccatactctacaatccaaacattcttgtgcatttaattcattgatattaaacacgat |
221 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37425122 |
aaaaaccttgaatcaaaagggtgctatgctagagtgggtaagtccatactctacaatccaaacattcttgtgcatttaattcattgatattaaacacaat |
37425023 |
T |
|
| Q |
222 |
tctttgctaattaaactaatatcttaattcttagctatataaatatatgatgtttaactcttcattgatagtttctcgtgcttggcttttccttgatctt |
321 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| |
|
|
| T |
37425022 |
tctttgctaattaatctaatatcttaattc-tagctatataaatatatgatgtttaactcttcattagtagtttctcgtgcttggcttttccattatctt |
37424924 |
T |
|
| Q |
322 |
ttcaatatgtattgatctacacttgacacagg |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
37424923 |
ttcaatatgtattgatctacacttgacacagg |
37424892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 49023020 - 49023105
Alignment:
| Q |
22 |
agtacctctcgactggccaatcatctgagaaaactgatgtgtttggattcggcattctcttattagagcttataaccggaatgaca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49023020 |
agtacctctcgactggccaatcatctgagaaaactgatgtgtttggattcggcattctcttattagagcttataactagaatgaca |
49023105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University