View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_high_15 (Length: 348)
Name: NF19769_high_15
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 332
Target Start/End: Original strand, 32566128 - 32566453
Alignment:
| Q |
8 |
tagcaaaggatggagaagactagaaatggaggtgaagagaatcttaaactcgggagtcttatagatattgtactctcttggaccctcgaggatgttctca |
107 |
Q |
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| T |
32566128 |
tagcaaaggatggagaagactagaaatggaagtgaagagaatcttaaactcgggagtcttatagatattgtactctcttggaccctcgaggatgctctca |
32566227 |
T |
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| Q |
108 |
atgaaaatctttacaaagacaaggtttcttttacaccctttacaacactcacaatgaaaaagtgtacttggtttttgaaaaataatttgaacatgaaaga |
207 |
Q |
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| T |
32566228 |
atgaaaatctttacaaagacaaggtttcttttacaccctttacaacactcgcaatgaaaaagtgtacttggtttttgaaaaataatttgaacatgaaaga |
32566327 |
T |
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| Q |
208 |
atac-aaatcttacaaagaacccgtgtcaaaatctcaataatgattgattatttatatatattttctccacttcattgttagattttctccctttttagt |
306 |
Q |
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|||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
32566328 |
atacaaaatcttacaaagaactcgtgtcaaaatctcgataatgattgattatttatatagattttctccacttcattgttagattttcaccctttttagt |
32566427 |
T |
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| Q |
307 |
agttgcaaagatgttatgttgtttaa |
332 |
Q |
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| T |
32566428 |
agttgcaaagatgttatgttgtttaa |
32566453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 59 - 288
Target Start/End: Complemental strand, 32648253 - 32648017
Alignment:
| Q |
59 |
gggagtcttatagatattgtactctcttggaccctcgaggatgttctcaatgaaaatctttacaaagacaaggtttcttttacaccctttacaacactca |
158 |
Q |
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| T |
32648253 |
gggagtcttatagatattgtactttcttggaccctcgaggatgttctcaatgaaaatctttacaaagacaaggtttcttttacacccttttcaatactca |
32648154 |
T |
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| Q |
159 |
caatgaaaaagtgtacttggtttttgaaaaataatttgaacatgaaagaatacaaa-------tcttacaaagaacccgtgtcaaaatctcaataatgat |
251 |
Q |
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| T |
32648153 |
caatgaaaaagtgaacttggtttttgaaaaagaatttgaacatgaaagagtacaaattcattgtgttacaaagaaatggtgttaaaatctcaataatgat |
32648054 |
T |
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| Q |
252 |
tgattatttatatatattttctccacttcattgttag |
288 |
Q |
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| T |
32648053 |
tgattgtttatatagattttctccacttcattgttag |
32648017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 32527763 - 32527666
Alignment:
| Q |
69 |
tagatattgtactctcttggaccctcgaggatgttctcaatgaaaatctttacaaagacaaggtttcttttacaccctttacaacactcacaatgaaaa |
167 |
Q |
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| T |
32527763 |
tagatattgtactctcatggcccctcgaggatgttctcaacgaaaatctttacaaacacaaggtttcatttaca-ccttttgaacactcacaatgaaaa |
32527666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 32534064 - 32534001
Alignment:
| Q |
75 |
ttgtactctcttggaccctcgaggatgttctcaatgaaaatctttacaaagacaaggtttcttt |
138 |
Q |
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| T |
32534064 |
ttgtactctcatggacctacgaggatgttttgaacgaaaatctttacaaagacaaggtttcttt |
32534001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 32517016 - 32516951
Alignment:
| Q |
68 |
atagatattgtactctcttggaccctcgaggatgttctcaatgaaaatctttacaaagacaaggtt |
133 |
Q |
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|||||||||||| |||||||||| || |||||| |||||||||||||||||| |||| || ||||| |
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| T |
32517016 |
atagatattgtattctcttggactctagaggatattctcaatgaaaatcttttcaaataccaggtt |
32516951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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