View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_high_16 (Length: 344)
Name: NF19769_high_16
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 43612052 - 43612366
Alignment:
| Q |
16 |
atgaatataggaaattgatagtacttacgaggtgagaaggcgaaagtgatgagcagtatcttgatgaagcatgttagagaggattgcatctagaagcaga |
115 |
Q |
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| T |
43612052 |
atgaatataggaaattgatagtacttacgaggtgagaaggcgaaagtgatgagcagtatcttgatgaagcatgttagagaggattgcatctagaagctgg |
43612151 |
T |
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| Q |
116 |
gacttggaaacagggatgtgtttctgtctaggcacttgtattttagaaattccca---cttctnnnnnnnnnnnnnnnnnnnncttggagtttttcttgt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
43612152 |
gacttggaaacagggatgtgtttctgtctaggcacttgtattttagaaattcccacttcttcatcatcatcatcatcatcatccttggagtttttcttgt |
43612251 |
T |
|
| Q |
213 |
tgttggggttttcactctgcctcacttgttcttgtgactctgaggcaacagatactatttcctgaagccttgaacaaggaagcctgtgttgtctgagaag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43612252 |
tgttggggttttcactctgcctcacttgttcttgtgactctgaggcaacagatactatttcctgaagccttgaacaaggaagcctgtgttgtctgagaag |
43612351 |
T |
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| Q |
313 |
tggagaagagagtaa |
327 |
Q |
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||||||||||||||| |
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| T |
43612352 |
tggagaagagagtaa |
43612366 |
T |
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