View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19769_high_17 (Length: 342)

Name: NF19769_high_17
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19769_high_17
NF19769_high_17
[»] chr1 (1 HSPs)
chr1 (13-342)||(7816637-7816967)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 7816967 - 7816637
Alignment:
Q  13 aatattcctccctgttttatttacatgttattttgnnnnnnntatttgtcttagtattcgcaatttaagatactactaaaacagcaatatttatttttta 112  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7816967 aatattcctccctgttttatttacatgttattttgaaaaaaatatttgtcttagtattcgcaatttaagatactactaaaacagcaatatttatttttta 7816868  T
Q  113 tcatgctctcttgctatttatttttctctctattcgtaaatgtttgaatccataacgactaacttcaagaataaaaataatgttcgtcattcggtagagt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7816867 tcatgctctcttgctatttatttttctctctattcgtaaatgtttgaatccataacgaccaacttcaagaataaaaataatgttcgtcattcggtagagt 7816768  T
Q  213 taattaacttcaagaatattggagagcatcgtttgtaatttgatggtttccattagtt-aggaaggatattaagtttggtcttaaagcgatctggtcgac 311  Q
    ||||||||||||||||||||| | ||||||||||| |||||| |||||||||| |||| ||||||||||||||||||| |||||||| |||||||  |||    
T  7816767 taattaacttcaagaatattgaaaagcatcgtttgcaatttggtggtttccatgagttcaggaaggatattaagtttgatcttaaagtgatctggctgac 7816668  T
Q  312 aggtataaagtgtatttgaaagaagcgtaat 342  Q
    | |||||||||||||||||||||| ||||||    
T  7816667 aagtataaagtgtatttgaaagaaacgtaat 7816637  T

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