View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_high_23 (Length: 305)
Name: NF19769_high_23
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 45 - 283
Target Start/End: Complemental strand, 31604422 - 31604184
Alignment:
| Q |
45 |
aactttaactgaagactcattttcatccatcataattttctcgcgactcagtttagatccacaataataaaactcaacttaacgttgcattggagaacag |
144 |
Q |
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| T |
31604422 |
aactttaaccgaagactcattttaatccatcataattttctcgcgactcagtttagatccacaataataaaactcaacttaacgttgcgttgtagaacag |
31604323 |
T |
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| Q |
145 |
aatttataacccaaatgtagccttgattttctattattgcttacaaattccaactgcaggagaaccctggatttgctgtgactttagaagataggaaaac |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31604322 |
aatttataacccaaatgtagccttgattttctattattgcttacaaattccaactgcaggagaaccctggatttgctgtgactttagaagataggaaaac |
31604223 |
T |
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| Q |
245 |
atttttcattattatctcatagtttatcacatactagta |
283 |
Q |
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| T |
31604222 |
atttttcattattatctcatagtttatcacatactagta |
31604184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 31606815 - 31606701
Alignment:
| Q |
145 |
aatttataacccaaatgtagccttgattttctattatt---gcttacaaattccaactgcaggagaaccctggatttgctgtgactttagaagataggaa |
241 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31606815 |
aatttataatccaaatgtagccttgattttctattattattgcttacaaattccaactgcaggagaaccctggatttgttgtgactttagaagataggaa |
31606716 |
T |
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| Q |
242 |
aacatttttcattat |
256 |
Q |
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||||||||||||||| |
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| T |
31606715 |
aacatttttcattat |
31606701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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