View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19769_high_25 (Length: 294)
Name: NF19769_high_25
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_high_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 5395410 - 5395696
Alignment:
| Q |
1 |
aacttcgcagttttgagcctctgtaggcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggagagagcttcaattcgacgtctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5395410 |
aacttcgcagttttgagcctctgtaggcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggagagagcttcaattcgacgtctttt |
5395509 |
T |
|
| Q |
101 |
tggtcagagacatcgcattgaatgtagtgaacgtacttatcagcgttccaagttggttgtggacggcgagccacgccataaaccttccatggaccacctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5395510 |
tggtcagagacatcgcattgaatgtagtgaacatacttatcagcgttccacgttggttgtggacggcgagccacaccataaaccttccatggaccacctg |
5395609 |
T |
|
| Q |
201 |
gtgtgtcgtcgagaggtagaatctctgctaggctatttcccacaattcccgtcacgcctataattaatgctacattttggaagcttc |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5395610 |
gtgtgtcgtcgagaggtagaatctctgctaggctatttcccacaattcccgtcacgcctataatcaatgctacattttggaagcttc |
5395696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 5391599 - 5391889
Alignment:
| Q |
1 |
aacttcgcagttttgagcctctgtaggcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggagagagcttcaattcgacgtctttt |
100 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5391599 |
aactttgcagttttgagcctctgtgggcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttt |
5391698 |
T |
|
| Q |
101 |
tggtcagagacatcgcattgaatgtagtgaacgtacttatcagcgttccaagtt-ggttgtggacggcgagccacgccataaaccttccatggaccacct |
199 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||| || ||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5391699 |
tgatcagagacatcgcattgaatgtagtcaacataattatcagtgttccacgtttggttgtggacggcgagccacgccataaaccttccatggaccacct |
5391798 |
T |
|
| Q |
200 |
ggtgtgtcgtcgagaggtagaatctctgctaggctatttcccacaattcccgtcacgcctataattaatgctacattttggaagcttcgtg |
290 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5391799 |
ggtgtgtcgtcgagaggtaaaatctctgctaggctatttcccacaattcccgtcacgcctataattaatgctacattttggaagcttcgtg |
5391889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 5401567 - 5401846
Alignment:
| Q |
11 |
ttttgagcctctgtaggcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggagagagcttcaattcgacgtctttttggtcagaga |
110 |
Q |
| |
|
||||||||||| || || |||||||||||||||||||||| ||||| ||||| || ||||| || || ||||||||||| || || ||||| | |||| |
|
|
| T |
5401567 |
ttttgagcctccgtgggtctgctggtccacgagacatagaatatatgggtcacgtctgttaaaggggatagcttcaattcaacatcgttttgattggaga |
5401666 |
T |
|
| Q |
111 |
catcgcattgaatgtagtgaacgtacttatcagcgttccaagttggttgtggacggcgagccacgccataaaccttccatggaccacctggtgtgtcgtc |
210 |
Q |
| |
|
|||| || ||||| |||||||| |||||| | ||||| ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| | |
|
|
| T |
5401667 |
catcacactgaatatagtgaacagggttatcaacattccacattggtcgtggacggcgagccacgccataaaccttccatggtccaactggtgtgtcttt |
5401766 |
T |
|
| Q |
211 |
gagaggtagaatctctgctaggctatttcccacaattcccgtcacgcctataattaatgctacattttggaagcttcgtg |
290 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||| | |||||| |
|
|
| T |
5401767 |
tagaggtaggatctctgctagactatttcccacaattcctgttacgcctataatcaatgctacattttggacgtttcgtg |
5401846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 3819507 - 3819571
Alignment:
| Q |
143 |
gcgttccaagttggttgtggacggcgagccacgccataaaccttccatggaccacctggtgtgtc |
207 |
Q |
| |
|
|||||||||| ||| |||||||||| || ||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
3819507 |
gcgttccaagaaggtcgtggacggcgggcaacgccgtaaaccttccatctaccgcctggtgtgtc |
3819571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University