View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_high_26 (Length: 280)
Name: NF19769_high_26
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 40409575 - 40409316
Alignment:
| Q |
9 |
acatcatcaagtgtgatgatcatctccataacatgctgatgtaagttactggtctcctcgtgctacctctctgaaaatgcagtaatcatcgcattactaa |
108 |
Q |
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| T |
40409575 |
acatcatcaagtgtgatgatcatctccataacatgctgatgtaagttactcgtctcctcgtgctacctctctgaaaatgcagtaataatcgcattactaa |
40409476 |
T |
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| Q |
109 |
cggtagaaaacccattattaagtagtgggaaaaaatcggatccataaattggagtcctgaaccagttgaaacggtcttgtgggaatgtaagtgtggcaat |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
40409475 |
cggcagaaaacccattattaagtagtgggaaaaaatcggatccataaattggagtcctgaaccagtcgaaacggtctggtgggaatgtaagtgtggcaat |
40409376 |
T |
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| Q |
209 |
ctttctcccatgtccaatgtccttaatttaccacacgttcgtgactgaaaacacaaaaac |
268 |
Q |
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| T |
40409375 |
ctttctcccatgtccaatgtccttaatttaccacacgctcgtgactgaaaacacaaaaac |
40409316 |
T |
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