View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19769_high_34 (Length: 240)

Name: NF19769_high_34
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19769_high_34
NF19769_high_34
[»] chr2 (6 HSPs)
chr2 (1-240)||(10464906-10465145)
chr2 (187-240)||(10476230-10476283)
chr2 (160-215)||(4026732-4026787)
chr2 (204-240)||(10494544-10494580)
chr2 (160-209)||(42420394-42420443)
chr2 (160-209)||(44589956-44590005)
[»] chr6 (1 HSPs)
chr6 (165-207)||(35069475-35069517)
[»] chr4 (3 HSPs)
chr4 (155-209)||(21731748-21731802)
chr4 (169-204)||(1706548-1706583)
chr4 (169-204)||(44863071-44863106)
[»] chr5 (4 HSPs)
chr5 (160-207)||(14675000-14675047)
chr5 (165-208)||(42099965-42100008)
chr5 (171-208)||(28776897-28776934)
chr5 (160-209)||(42569080-42569129)
[»] chr1 (1 HSPs)
chr1 (160-209)||(15942254-15942303)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10465145 - 10464906
Alignment:
Q  1 aacactgagtcctatattaaacaagagtcatggctgaagctaggtttgggaaaaggagttattagccgcacagttctcaactgggtgttcaatcccaagt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10465145 aacactgagtcttatattaaacaagagtcatggctgaagctaggtttgggaaaaggagttattagccgcacagttctcaactgggtgttcaatcccaagt 10465046  T
Q  101 ccgattctatccccgcagatctcactttctttgactggagggataactataaggtactgtatcatttgctataaaaatagcttctgcataagcacttatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10465045 ccgattctatccccgcagatctcactttctttgactggagggataactataaggtactgcatcatttgctataaaaatagcttctgcataagcacttatc 10464946  T
Q  201 atgataagctgcaaaaacactataagctgtttatacaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10464945 atgataagctgcaaaaacactataagctgtttatacaaaa 10464906  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 10476283 - 10476230
Alignment:
Q  187 cataagcacttatcatgataagctgcaaaaacactataagctgtttatacaaaa 240  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  10476283 cataagcgcttatcatgataagctgcaaaaacactataagctgcttatacaaaa 10476230  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 4026787 - 4026732
Alignment:
Q  160 tatcatttgctataaaaatagcttctgcataagcacttatcatgataagctgcaaa 215  Q
    |||| ||||||||||||||||||| |  ||||||||||||||||||||||||||||    
T  4026787 tatcttttgctataaaaatagcttatagataagcacttatcatgataagctgcaaa 4026732  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 10494580 - 10494544
Alignment:
Q  204 ataagctgcaaaaacactataagctgtttatacaaaa 240  Q
    |||| ||||||||||||||||||||||||||||||||    
T  10494580 ataaactgcaaaaacactataagctgtttatacaaaa 10494544  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 42420394 - 42420443
Alignment:
Q  160 tatcatttgctataaaaatagcttctgcataagcacttatcatgataagc 209  Q
    |||| ||||||||||||||||||| | | ||||| |||||||||||||||    
T  42420394 tatcttttgctataaaaatagcttatacgtaagcgcttatcatgataagc 42420443  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 44590005 - 44589956
Alignment:
Q  160 tatcatttgctataaaaatagcttctgcataagcacttatcatgataagc 209  Q
    |||||||||||||| ||| | ||| | |||||||||||||||||||||||    
T  44590005 tatcatttgctatagaaacaacttatacataagcacttatcatgataagc 44589956  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 35069517 - 35069475
Alignment:
Q  165 tttgctataaaaatagcttctgcataagcacttatcatgataa 207  Q
    ||||||||| ||||||||| |||||||||||||||||||||||    
T  35069517 tttgctatataaatagcttatgcataagcacttatcatgataa 35069475  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 21731748 - 21731802
Alignment:
Q  155 tactgtatcatttgctataaaaatagcttctgcataagcacttatcatgataagc 209  Q
    |||| |||| ||||||||||||||||||| | | |||||||||||||||||||||    
T  21731748 tactttatcttttgctataaaaatagcttatacgtaagcacttatcatgataagc 21731802  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 1706583 - 1706548
Alignment:
Q  169 ctataaaaatagcttctgcataagcacttatcatga 204  Q
    ||||||||||||||||| ||||||||||||||||||    
T  1706583 ctataaaaatagcttctacataagcacttatcatga 1706548  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 44863071 - 44863106
Alignment:
Q  169 ctataaaaatagcttctgcataagcacttatcatga 204  Q
    ||||||||||||||| ||||||||||||||||||||    
T  44863071 ctataaaaatagcttatgcataagcacttatcatga 44863106  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 14675000 - 14675047
Alignment:
Q  160 tatcatttgctataaaaatagcttctgcataagcacttatcatgataa 207  Q
    ||||| ||| |||| ||||||||||| |||||||||||||||||||||    
T  14675000 tatcacttgttatagaaatagcttctacataagcacttatcatgataa 14675047  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 42099965 - 42100008
Alignment:
Q  165 tttgctataaaaatagcttctgcataagcacttatcatgataag 208  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||    
T  42099965 tttgctatataaatagcttatacataagcacttatcatgataag 42100008  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 28776934 - 28776897
Alignment:
Q  171 ataaaaatagcttctgcataagcacttatcatgataag 208  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  28776934 ataaaaatagcttatacataagcacttatcatgataag 28776897  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 42569080 - 42569129
Alignment:
Q  160 tatcatttgctataaaaatagcttctgcataagcacttatcatgataagc 209  Q
    |||| ||||||||| ||||||||| | ||||||| |||||||||||||||    
T  42569080 tatcttttgctatagaaatagctttttcataagcgcttatcatgataagc 42569129  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 15942303 - 15942254
Alignment:
Q  160 tatcatttgctataaaaatagcttctgcataagcacttatcatgataagc 209  Q
    |||| ||| ||||| ||||||||| | |||||||||||||||||||||||    
T  15942303 tatctttttctatataaatagcttatacataagcacttatcatgataagc 15942254  T

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